Main interface
bget -h
#> Lightweight downloader for bioinformatics data, databases and files (under development). It will provides a simple and parallelized method to access various bioinformatics resoures. More see here https://github.com/clindet/bget.
#>
#> Usage:
#> bget [flags]
#> bget [command]
#>
#> Available Commands:
#> api Query bioinformatics website APIs.
#> doi Can be used to access files via DOI.
#> help Help about any command
#> key Can be used to access URLs via a key string.
#> seq Can be used to access sequence data via unique id (dbGAP and EGA) or manifest files (TCGA).
#> url Can be used to access URLs via Golang http, wget, curl, axel and git, and rsync.
#>
#> Flags:
#> --clean remove _download and _log in current dir.
#> -h, --help help for bget
#> --log-dir string log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> --save-log Save log to file.
#> -k, --task-id string task ID (default is random). (default "8t728ol2maxkmsi")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)
#> -v, --version version for bget
#>
#> Use "bget [command] --help" for more information about a command.bget api
bget api -h
#> Query bioinformatics website APIs.
#>
#> Usage:
#> bget api [flags]
#> bget api [command]
#>
#> Available Commands:
#> biots Query bio.tools website APIs.
#> cligov Query clinicaltrials.gov website APIs.
#> crf Query crossref guestquery APIs.
#> dta Query dataset2tools website APIs: datasets (d), tools (t), and canned analysis (a).
#> gdc Query GDC portal website APIs.
#> mgrast Query mg-rast website APIs.
#> ncbi Query ncbi website APIs.
#>
#> Flags:
#> -h, --help help for api
#> -o, --outfn string Out specifies destination of the returned data (default to stdout).
#>
#> Global Flags:
#> --log-dir string log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> --save-log Save log to file.
#> -k, --task-id string task ID (default is random). (default "ykdbmlls4y7bnrk")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)
#>
#> Use "bget api [command] --help" for more information about a command.ncbi
bget api ncbi -h
#> Query ncbi website APIs.
#>
#> Usage:
#> bget api ncbi [flags]
#>
#> Examples:
#> # query pubmed with 'B-ALL'
#> bget api ncbi -d pubmed -q B-ALL --format XML -e your_email@domain.com
#>
#> # query pubmed and convert it to json format
#> bget api ncbi -q "Galectins control MTOR and AMPK in response to lysosomal damage to induce autophagy OR MTOR-independent autophagy induced by interrupted endoplasmic reticulum-mitochondrial Ca2+ communication: a dead end in cancer cells. OR The PARK10 gene USP24 is a negative regulator of autophagy and ULK1 protein stability OR Coordinate regulation of autophagy and the ubiquitin proteasome system by MTOR." | bioctl cvrt --xml2json pubmed - > final.json
#>
#> # query larger items
#> bget api ncbi -q "dataset and RNA-seq and bioinformatics[journal]" -e "your_email@domain.com" -m 20 | awk '/<[?]xml version="1.0" [?]>/{close(f); f="abstract.http.XML.tmp" ++c;next} {print>f;}' && bioctl cvrt --xml2json pubmed abstract.http.XML.tmp* -t 11 > final.json
#>
#> Flags:
#> -d, --db string Db specifies the database to search (default "pubmed")
#> -e, --email string Email specifies the email address to be sent to the server (NCBI website is required). (default "your_email@domain.com")
#> --extra string Extra query parameters.
#> --format string Rettype specifies the format of the returned data (CSV, TSV, JSON for gdc; XML/TEXT for ncbi).
#> --from int Parameters of API control the start item of retrived data. (default -1)
#> -h, --help help for ncbi
#> --indent int Control the indent of output json files. (default 4)
#> --json-pretty Pretty json files.
#> -m, --per-size int Retmax specifies the number of records to be retrieved per request. (default 100)
#> --proxy string HTTP proxy to query.
#> -q, --query string Query specifies the search query for record retrieval (required).
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> --size int Parameters of API control the lenth of retrived data. Default is auto determined. (default -1)
#> --sort-keys Control wheather to sort JSON key.
#> -t, --thread int Thread to process. (default 2)
#> --timeout int Set the timeout of per request. (default 35)
#> --xml2json convert returned XML data to json format.
#>
#> Global Flags:
#> --log-dir string Log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> -o, --outfn string Out specifies destination of the returned data (default to stdout).
#> --save-log Save log to local file.
#> -k, --task-id string Task ID (random). (default "j87m3v209t043q1")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)gdc
bget api gdc -h
#> Query GDC portal website APIs.
#>
#> Usage:
#> bget api gdc [flags]
#>
#> Examples:
#> # retrive projects meta info from GDC portal
#> bget api gdc -p
#> bget api gdc -p --json-pretty
#> bget api gdc -p -q TARGET-NBL --json-pretty
#> bget api gdc -p --format tsv > tcga_projects.tsv
#> bget api gdc -p --format csv > tcga_projects.csv
#> bget api gdc -p --from 1 --size 2
#> # check GDC portal status (https://portal.gdc.cancer.gov/)
#> bget api gdc -s
#> # retrive cases info from GDC portal
#> bget api gdc -c
#> # retrive files info from GDC portal
#> bget api gdc -f
#> # retrive annotations info from GDC portal
#> bget api gdc -a
#> # query manifest for gdc-client
#> bget api gdc -m -q "5b2974ad-f932-499b-90a3-93577a9f0573,556e5e3f-0ab9-4b6c-aa62-c42f6a6cf20c" -o my_manifest.txt
#> bget api gdc -m -q "5b2974ad-f932-499b-90a3-93577a9f0573,556e5e3f-0ab9-4b6c-aa62-c42f6a6cf20c" > my_manifest.txt
#> bget api gdc -m -q "5b2974ad-f932-499b-90a3-93577a9f0573,556e5e3f-0ab9-4b6c-aa62-c42f6a6cf20c" -n
#> # query data that only support the samll filesize
#> bget api gdc -d -q "5b2974ad-f932-499b-90a3-93577a9f0573" -n
#>
#> Flags:
#> -a, --annotations Retrive annotations info from GDC portal.
#> -c, --cases Retrive cases info from GDC portal.
#> -d, --data Retrive /data from GDC portal.
#> --extra string Extra query parameters.
#> --fields string Fields parameters.
#> -f, --files Retrive files info from GDC portal.
#> --filter string Retrive data with GDC filter.
#> --format string Rettype specifies the format of the returned data (CSV, TSV, JSON for gdc; XML/TEXT for ncbi).
#> --from int Parameters of API control the start item of retrived data. (default -1)
#> -h, --help help for gdc
#> --indent int Control the indent of output json files. (default 4)
#> --json-pretty Pretty json files.
#> -l, --legacy Use legacy API of GDC portal.
#> -m, --manifest Retrive /manifest data from GDC portal.
#> -p, --projects Retrive projects meta info from GDC portal.
#> --proxy string HTTP proxy to query.
#> -q, --query string Query specifies the search query for record retrieval (required).
#> -n, --remote-name Use remote defined filename.
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> --size int Parameters of API control the lenth of retrived data. Default is auto determined. (default -1)
#> --slicing Retrive BAM slicing from GDC portal.
#> --sort string Sort parameters.
#> --sort-keys Control wheather to sort JSON key.
#> -s, --status Check GDC portal status (https://portal.gdc.cancer.gov/).
#> --timeout int Set the timeout of per request. (default 35)
#> --token string Token to access GDC.
#> --xml2json convert returned XML data to json format.
#>
#> Global Flags:
#> --log-dir string Log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> -o, --outfn string Out specifies destination of the returned data (default to stdout).
#> --save-log Save log to local file.
#> -k, --task-id string Task ID (random). (default "cvxari3inxx6avk")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)dta
bget api dta -h
#> Query dataset2tools website APIs: datasets (d), tools (t), and canned analysis (a).
#>
#> Usage:
#> bget api dta [flags]
#>
#> Examples:
#> # query canned analysis accession , e.g. DCA00000060.
#> bget api dta -a DCA00000060
#> # query dataset accession number, e.g. GSE31106
#> bget api dta -s GSE31106 | bioctl fmt --json-pretty -
#> # query via object type
#> bget api dta --type dataset | bioctl fmt --json-pretty --indent 2 -
#> # props of dataset accession, e.g. upregulated.
#> bget api dta -g upregulated | json2csv -o out.csv
#>
#> Flags:
#> -a, --analysis-acc string Canned analysis accession , e.g. DCA00000060.
#> -s, --dataset-acc string Dataset accession number, e.g. GSE31106.
#> -d, --disease string Disease name, e.g. prostate cancer
#> --extra string Extra query parameters.
#> --format string Rettype specifies the format of the returned data (CSV, TSV, JSON for gdc; XML/TEXT for ncbi).
#> --from int Parameters of API control the start item of retrived data. (default -1)
#> -g, --geneset string With dataset accession, e.g. upregulated.
#> -h, --help help for dta
#> --indent int Control the indent of output json files. (default 4)
#> --json-pretty Pretty json files.
#> --proxy string HTTP proxy to query.
#> -q, --query string Query specifies the search query for record retrieval (required).
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> --size int Parameters of API control the lenth of retrived data. Default is auto determined. (default -1)
#> --sort-keys Control wheather to sort JSON key.
#> --timeout int Set the timeout of per request. (default 35)
#> -t, --tool string Tool name, e.g. bwa.
#> --type string Object type [tool, dataset, canned_analysis].
#> --xml2json convert returned XML data to json format.
#>
#> Global Flags:
#> --log-dir string Log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> -o, --outfn string Out specifies destination of the returned data (default to stdout).
#> --save-log Save log to local file.
#> -k, --task-id string Task ID (random). (default "g9pkz5h1qvak04f")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)cligov
bget api cligov -h
#> Query clinicaltrials.gov website APIs. Detail see https://clinicaltrials.gov/api/gui/ref/api_urls
#>
#> Usage:
#> bget api cligov [flags]
#>
#> Examples:
#> # returns the date when the ClinicalTrials.gov dataset was posted.
#> bget api cligov --info-dat-vers
#> # returns the current version number of the ClinicalTrials.gov API
#> bget api cligov --info-api-vers
#> # returns detailed definitions.
#> bget api cligov --info-api-defs
#> # returns all available data elements for a single study record.
#> bget api cligov --info-study-struct
#> # returns all data elements.
#> bget api cligov --info-study-fields
#> # returns an annotated version of the Study Structure info URL.
#> bget api cligov --info-study-stat
#> # returns groups of weighted study fields, or "search areas"
#> bget api cligov --info-search-area
#>
#> # query functions
#> bget api cligov -q heart+attack --full-studies --format json
#> bget api cligov -q heart+attack --fields NCTId,Condition,BriefTitle --study-fields
#> bget api cligov -q heart+attack --field Condition --field-values
#>
#> Flags:
#> --extra string Extra query parameters.
#> --field string Specifies which field to collect values for in a Field Values query.
#> --field-values Returns all values found in a single API field for a set of study records.
#> --fields string Specifies which fields to return results for in a Study Fields query.
#> --format string Rettype specifies the format of the returned data (CSV, TSV, JSON for gdc; XML/TEXT for ncbi).
#> --from int Parameters of API control the start item of retrived data. (default -1)
#> --full-studies Returns all content for a small set of study records.
#> -h, --help help for cligov
#> --indent int Control the indent of output json files. (default 4)
#> --info-api-defs Returns detailed definitions.
#> --info-api-vers Returns the current version number of the ClinicalTrials.gov API.
#> --info-dat-vers Returns the date when the ClinicalTrials.gov dataset was posted.
#> --info-search-area Returns groups of weighted study fields, or "search areas".
#> --info-study-fields Returns all study data elements.
#> --info-study-stat Returns an annotated version of the Study Structure info URL.
#> --info-study-struct Returns all available data elements for a single study record.
#> --json-pretty Pretty json files.
#> --proxy string HTTP proxy to query.
#> -q, --query string Query specifies the search query for record retrieval (required).
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> --size int Parameters of API control the lenth of retrived data. Default is auto determined. (default -1)
#> --sort-keys Control wheather to sort JSON key.
#> --study-fields Returns values from selected API fields for a large set of study records.
#> --timeout int Set the timeout of per request. (default 35)
#> --xml2json convert returned XML data to json format.
#>
#> Global Flags:
#> --log-dir string Log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> -o, --outfn string Out specifies destination of the returned data (default to stdout).
#> --save-log Save log to local file.
#> -k, --task-id string Task ID (random). (default "bob3jhhs6cwttlh")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)biots
bget api biots -h
#> Query bio.tools website APIs. Detail see https://biotools.readthedocs.io/en/latest/api_reference.html
#>
#> Usage:
#> bget api biots [flags]
#>
#> Examples:
#> # query item detail
#> bget api biots --tool signalp
#> # search item
#> bget api biots --name signalp
#> bget api biots --topic Proteomics
#> bget api biots --dtype 'Protein sequence'
#> bget api biots --dfmt FASTA
#> bget api biots --ofmt 'ClustalW format'
#>
#> Flags:
#> --dfmt string Fuzzy search over input and output for EDAM Format (term)
#> --dtype string Fuzzy search over input and output for EDAM Data (term)
#> --extra string Extra query parameters.
#> --format string Rettype specifies the format of the returned data (CSV, TSV, JSON for gdc; XML/TEXT for ncbi).
#> -h, --help help for biots
#> --id string Search for bio.tools tool ID e.g signalp)
#> --indent int Control the indent of output json files. (default 4)
#> --json-pretty Pretty json files.
#> --name string Search for bio.tools tool name e.g signalp)
#> --ofmt string Fuzzy search over output for EDAM Format (term)
#> --page int Page index. (default 1)
#> --proxy string HTTP proxy to query.
#> --publication string Fuzzy search over publication (DOI, PMID, PMCID, publication type and tool version)
#> -q, --query string Query specifies the search query for record retrieval (required).
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> --sort-keys Control wheather to sort JSON key.
#> --timeout int Set the timeout of per request. (default 35)
#> --tool string Obtain information about a single tool (https://bio.tools/api/tool/:id/).
#> --topic string Search for EDAM Topic (term)
#> --xml2json convert returned XML data to json format.
#>
#> Global Flags:
#> --log-dir string Log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> -o, --outfn string Out specifies destination of the returned data (default to stdout).
#> --save-log Save log to local file.
#> -k, --task-id string Task ID (random). (default "jgf00jy64tkd9m0")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)crf
bget api crf -h
#> Query crossref guestquery APIs. Detail see https://www.crossref.org/guestquery website.
#>
#> Usage:
#> bget api crf [flags]
#>
#> Examples:
#> bget api crf --doi 10.1073/pnas.1814397115
#> bget api crf --doi 10.1073/pnas.1814397115 --xml2json --json-pretty --indent 1
#>
#> Flags:
#> --doi string unique doi.
#> --extra string Extra query parameters.
#> --format string Rettype specifies the format of the returned data (CSV, TSV, JSON for gdc; XML/TEXT for ncbi).
#> -h, --help help for crf
#> --indent int Control the indent of output json files. (default 4)
#> --json-pretty Pretty json files.
#> --proxy string HTTP proxy to query.
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> --sort-keys Control wheather to sort JSON key.
#> --timeout int Set the timeout of per request. (default 35)
#> --xml2json convert returned XML data to json format.
#>
#> Global Flags:
#> --log-dir string Log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> -o, --outfn string Out specifies destination of the returned data (default to stdout).
#> --save-log Save log to local file.
#> -k, --task-id string Task ID (random). (default "7irofxq0dlk333w")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)mgrast
bget api mgrast -h
#> Query mg-rast website APIs. Detail see http://api.mg-rast.org/api.html
#>
#> Usage:
#> bget api mgrast [flags]
#> bget api mgrast [command]
#>
#> Available Commands:
#> anno Query http://api.mg-rast.org/anno website annotation APIs.
#> compute Query http://api.mg-rast.org/compute website compute APIs.
#> darkmatter Query http://api.mg-rast.org/darkmatter website compute APIs.
#> download Query http://api.mg-rast.org/download website compute APIs.
#> library Query http://api.mg-rast.org/library website compute APIs.
#> proj Query http://api.mg-rast.org/project website compute APIs.
#> sample Query http://api.mg-rast.org/sample website compute APIs.
#>
#> Flags:
#> --auth string auth key
#> --extra string Extra query parameters.
#> --format string Rettype specifies the format of the returned data (CSV, TSV, JSON for gdc; XML/TEXT for ncbi).
#> -h, --help help for mgrast
#> --indent int Control the indent of output json files. (default 4)
#> --info returns description of parameters and attributes.
#> --json-pretty Pretty json files.
#> --proxy string HTTP proxy to query.
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> --seq string set sequence
#> --sort-keys Control wheather to sort JSON key.
#> --timeout int Set the timeout of per request. (default 35)
#> --xml2json convert returned XML data to json format.
#>
#> Global Flags:
#> --log-dir string Log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> -o, --outfn string Out specifies destination of the returned data (default to stdout).
#> --save-log Save log to local file.
#> -k, --task-id string Task ID (random). (default "wuxioslx36pv435")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)
#>
#> Use "bget api mgrast [command] --help" for more information about a command.bget doi
bget doi -h
#> Can be used to access files via DOI. More see here https://github.com/clindet/bget.
#>
#> Usage:
#> bget doi [doi1 doi2 doi3...] [flags]
#>
#> Examples:
#> bget doi 10.5281/zenodo.3363060 10.5281/zenodo.3357455 10.5281/zenodo.3351812 -t 3
#> bget doi 10.1016/j.devcel.2017.03.001 10.1016/j.stem.2019.07.009 10.1016/j.celrep.2018.03.072 -t 2
#>
#> # query pdf and meta data using PubMed ID
#> dois=`bget api ncbi --xml2json --json-pretty -q '30487223[pmid] or 30402350[pmid] or 29279377[pmid]' --size 3 -m 3 | grep / | grep 10. | sed 's/ .* "//' | tr -d '",' | sort -u` && echo ${dois} && bget doi ${dois} --print-meta --print-crossref
#>
#> bget doi 10.1080/15548627.2018.1505155 --proxy http://username:password@hostname:port
#> bget doi 10.1182/blood.2019000200 --enable-scihub
#> bget doi 10.1109/JPROC.2019.2905423 -n
#> bget doi 10.1073/pnas.1814397115 --print-meta --print-crossref
#>
#> Flags:
#> --enable-pmc enable try PMC database.
#> --enable-scihub enable try scihub spider.
#> -g, --engine string Point the download engine: go-http, wget, curl, axel, git, and rsync. (default "go-http")
#> -e, --extra-cmd string Extra flags and values pass to internal CMDs
#> --full-text string access full text. (default "true")
#> -h, --help help for doi
#> --ignore Contine to download and skip the check of existed files.
#> -l, --list-file string A file contains dois for download.
#> -m, --mirror string Set the mirror of resources.
#> -o, --outdir string Set the download dir.
#> -f, --overwrite Logical indicating that whether to overwrite existing files.
#> --print-crossref print crossref meta data.
#> --print-meta print website meta data.
#> --proxy string HTTP proxy to download.
#> -n, --remote-name Use remote defined filename.
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> -s, --seperator string Optional 'url1{seperator}url2' for multiple keys, urls, or seqs. (default ",")
#> --suppl access supplementary files.
#> -t, --thread int Concurrency download thread. (default 1)
#> --thread-axel int Set the thread of axel. (default 5)
#> --timeout int Set the timeout of per request. (default 35)
#>
#> Global Flags:
#> --log-dir string log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> --save-log Save log to file.
#> -k, --task-id string task ID (default is random). (default "ud32gfsb939l2w9")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)bget seq
bget seq -h
#> Can be used to access sequence data via unique id or manifest files. More see here https://github.com/clindet/bget.
#>
#> Usage:
#> bget seq [id1 id2 id3... | manifest1 manifest2 manifest3...] [flags]
#>
#> Examples:
#> bget seq ERR3324530 SRR544879 # download files from SRA databaes
#> bget seq GSE23543 GSM1098572 -t 2 # download files from GEO databaes (auto download SRA acc list and run info)
#> bget seq dbgap.krt # download files from dbGap database using krt files
#> bget seq EGAD00001000951 # download dataset from EGA databaes
#> bget seq EGAF00000585895 # download file from EGA databaes
#>
#> # download TCGA files using file id
#> bget seq b7670817-9d6b-494e-9e22-8494e2fd430d
#>
#> # download TCGA files using manifest files
#> # split for parallel
#> split -a 3 --additional-suffix=.txt -l 100 gdc_manifest.2019-08-23-TCGA.txt -d
#> for i in x*.txt
#> do
#> head -n 1 x000.txt > ${i}.tmp && cat ${i} >> ${i}.tmp &&mv ${i}.tmp ${i}
#> done
#> sed -i '1d' x000.txt
#> bget seq *.txt -t 5
#>
#> # support auto (if you do not have *.krt, TCGA manifest, please not include it for test)
#> bget seq SRR544879 GSE23543 EGAD00001000951 b7670817-9d6b-494e-9e22-8494e2fd430d dbgap.krt *.txt -t 5
#>
#> Flags:
#> -g, --engine string Point the download engine: go-http, wget, curl, axel, git, and rsync. (default "go-http")
#> -e, --extra-cmd string Extra flags and values pass to internal CMDs
#> -h, --help help for seq
#> --ignore Contine to download and skip the check of existed files.
#> -l, --list-file string A file contains accession ids for download.
#> -m, --mirror string Set the mirror of resources.
#> -o, --outdir string Set the download dir. (default "/Users/apple/Documents/clindet/bget/docs")
#> -f, --overwrite Logical indicating that whether to overwrite existing files.
#> --proxy string HTTP proxy to download.
#> --query-gpl Wheather fetch GPL files from GEO database.
#> -n, --remote-name Use remote defined filename.
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> -s, --seperator string Optional 'url1{seperator}url2' for multiple keys, urls, or seqs. (default ",")
#> -t, --thread int Concurrency download thread. (default 1)
#> --thread-axel int Set the thread of axel. (default 5)
#> --timeout int Set the timeout of per request. (default 35)
#> --token-file-ega string Credential file to access EGA archive files, {"username": "{your_user_name}",
#> "password": "{your_password}","client_secret":"AMenuDLjVdVo4BSwi0QD54LL6NeVDEZRzEQUJ7h
#> JOM3g4imDZBHHX0hNfKHPeQIGkskhtCmqAJtt_jm7EKq-rWw"}.
#> --token-gdc string Token to access TCGA portal files.
#>
#> Global Flags:
#> --log-dir string log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> --save-log Save log to file.
#> -k, --task-id string task ID (default is random). (default "y1xhwn1sa5rx7cg")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)bget url
bget url -h
#> Can be used to access URLs via Golang http, wget, curl, axel and git, and rsync. More see here https://github.com/clindet/bget.
#>
#> Usage:
#> bget url [url1 url2 url3...] [flags]
#>
#> Examples:
#> urls="https://dldir1.qq.com/weixin/Windows/WeChatSetup.exe,http://download.oray.com/pgy/windows/PgyVPN_4.1.0.21693.exe,https://dldir1.qq.com/qqfile/qq/PCQQ9.1.6/25786/QQ9.1.6.25786.exe" && echo $urls | tr "," "\n"> /tmp/urls.list
#>
#> bget url ${urls}
#> bget url https://dldir1.qq.com/weixin/Windows/WeChatSetup.exe https://dldir1.qq.com/qqfile/qq/PCQQ9.1.6/25786/QQ9.1.6.25786.exe --save-log
#> bget url ${urls} -t 3 -o /tmp/download -f -g wget --save-log --verbose 2
#> bget url ${urls} -t 2 -o /tmp/download --save-log --verbose 2
#>
#> bget url ${urls} -t 3 -o /tmp/download -g wget --ignore
#> bget url -l /tmp/urls.list -o /tmp/download -f -t 3
#>
#> bget url Miachol/github_demo --github
#> bget url PapenfussLab/gridss clindet/bget --with-github-assets -t 5 --github
#> bget url PapenfussLab/gridss clindet/bget --only-github-assets -t 5 --github
#> bget url PapenfussLab/gridss clindet/bget --with-github-assets --with-assets-versions v2.7.2,v0.1.3 -t 5 --github
#>
#> Flags:
#> -g, --engine string Point the download engine: go-http, wget, curl, axel, git, and rsync. (default "go-http")
#> -e, --extra-cmd string Extra flags and values pass to internal CMDs
#> --github GitHub mode.
#> --github-assets-versions string Required to get specific tagname of github assets (e.g. v2.7.1,v1.0.0).
#> -h, --help help for url
#> --ignore Contine to download and skip the check of existed files.
#> -l, --list-file string A file contains urls for download.
#> -m, --mirror string Set the mirror of resources.
#> --only-github-assets Logical indicating that whether to only download github repo assets files.
#> -o, --outdir string Set the download dir. (default "/Users/apple/Documents/clindet/bget/docs")
#> -f, --overwrite Logical indicating that whether to overwrite existing files.
#> --proxy string HTTP proxy to download.
#> -n, --remote-name Use remote defined filename.
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> -s, --seperator string Optional 'url1{seperator}url2' for multiple keys, urls, or seqs. (default ",")
#> -t, --thread int Concurrency download thread. (default 1)
#> --thread-axel int Set the thread of axel. (default 5)
#> --timeout int Set the timeout of per request. (default 35)
#> -u, --uncompress Uncompress download files for .zip, .tar.gz, and .gz suffix files.
#> --with-github-assets Logical indicating that whether to download associated assets files of github repo.
#>
#> Global Flags:
#> --log-dir string log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> --save-log Save log to file.
#> -k, --task-id string task ID (default is random). (default "6sh42j0t9mpp0aa")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)bget key
bget key -h
#> Can be used to access URLs via a key string. e.g. 'item' or 'item@version #releaseVersion', : bwa, reffa-defuse@GRCh38 #97. More see here https://github.com/clindet/bget.
#>
#> Usage:
#> bget key [key1 key2 key3...] [flags]
#>
#> Examples:
#> # download bwa source (with task env info)
#> bget key bwa --verbose 2
#> # get all available keys
#> bget key -a
#> # in JSON format
#> bget key -a --format json
#> # view all bwa and samtools available tags in table
#> bget key bwa samtools -v
#> # view all bwa and samtools available tags in json
#> bget key bwa samtools -v --format json
#>
#> # force download defuse reference (with task env info and save log to file)
#> bget key "reffa/defuse@GRCh38 #97" -t 10 -f --verbose 2 --save-log
#> bget key reffa/defuse@GRCh38 release=97 -t 10 -f
#> # download annovar reference
#> bget key db/annovar@clinvar_20170501 db/annovar@clinvar_20180603 builder=hg38
#>
#> bget key db/annovar -v --formt text
#> bget key db/annovar version='clinvar_20131105, clinvar_20140211, clinvar_20140303, clinvar_20140702, clinvar_20140902, clinvar_20140929, clinvar_20150330, clinvar_20150629, clinvar_20151201, clinvar_20160302, clinvar_20161128, clinvar_20170130, clinvar_20170501, clinvar_20170905, clinvar_20180603, avsnp150, avsnp147, avsnp144, avsnp142, avsnp138, cadd, caddgt10, caddgt20, cadd13, cadd13gt10, cadd13gt20, cg69, cg46, cosmic70, cosmic68wgs, cosmic68, cosmic67wgs, cosmic67, cosmic65, cosmic64, dbnsfp35a, dbnsfp33a, dbnsfp31a_interpro, dbnsfp30a, dbscsnv11, eigen, esp6500siv2_ea, esp6500siv2_aa, esp6500siv2_all, exac03nontcga, exac03nonpsych, exac03, fathmm, gerp++gt2, gme, gnomad_exome, gnomad_genome, gwava, hrcr1, icgc21, intervar_20170202, kaviar_20150923, ljb26_all, mcap, mitimpact2, mitimpact24, nci60, popfreq_max_20150413, popfreq_all_20150413, revel, regsnpintron' builder=hg19 -t 10 -f
#>
#> Flags:
#> --autopath Logical indicating that whether to create subdir in download dir: e.g. reffa/{{key}}/
#> -g, --engine string Point the download engine: go-http, wget, curl, axel, git, and rsync. (default "go-http")
#> -e, --extra-cmd string Extra flags and values pass to internal CMDs
#> --format string Output format (text, json, table)
#> -h, --help help for key
#> --ignore Contine to download and skip the check of existed files.
#> -a, --keys-all Show all available string key can be download.
#> -l, --list-file string A file contains keys for download.
#> -m, --mirror string Set the mirror of resources.
#> -o, --outdir string Set the download dir.
#> -f, --overwrite Logical indicating that whether to overwrite existing files.
#> --proxy string HTTP proxy to download.
#> -n, --remote-name Use remote defined filename.
#> -r, --retries int Retry specifies the number of attempts to retrieve the data. (default 5)
#> --retries-sleep-time int Sleep time after one retry. (default 5)
#> -s, --seperator string Optional 'url1{seperator}url2' for multiple keys, urls, or seqs. (default ",")
#> -v, --show-versions Show all available versions of key.
#> -t, --thread int Concurrency download thread. (default 1)
#> --thread-axel int Set the thread of axel. (default 5)
#> --timeout int Set the timeout of per request. (default 35)
#> -u, --uncompress Uncompress download files for .zip, .tar.gz, and .gz suffix files.
#> --with-assets Logical indicating that whether to download associated assets files.
#>
#> Global Flags:
#> --log-dir string log dir. (default "/Users/apple/Documents/clindet/bget/docs/_log")
#> --save-log Save log to file.
#> -k, --task-id string task ID (default is random). (default "i80qflt1ucomltk")
#> --verbose int verbose level (0:no output, 1: basic level, 2: with env info) (default 1)## show all supported items
bget key -a
#> +++
#> | 3dchromatin-replicateqc | abyss |
#> | advntr | agfusion |
#> | aligner/blast | aligner/blat |
#> | anchor | annovar |
#> | annovarr | app/babun |
#> | app/cmder | app/iontorrent-suite |
#> | app/orange3 | arnapipe |
#> | asap | assemble/edena |
#> | atlas2 | autochrom3d |
#> | backspin | ballgown |
#> | bamtools | bamutil |
#> | bazam | bcbio-nextgen |
#> | bcftools | beagle |
#> | bearscc | bedops |
#> | bedtools2 | bget |
#> | bigstitcher | bin3c |
#> | biobloom | bioctl |
#> | bioextr | bioinstaller |
#> | biopython | bitbucket/3depiloop |
#> | bitbucket/aa-stat | bitbucket/acdc |
#> | bitbucket/agalma | bitbucket/aggrescan3d |
#> | bitbucket/aikyatan | bitbucket/alpha |
#> | bitbucket/aodp-v2.0-release | bitbucket/arpeggio |
#> | bitbucket/autometa | bitbucket/avishkar |
#> | bitbucket/bacmeta | bitbucket/badtrip |
#> | bitbucket/bam-matcher | bitbucket/banner-chemdner |
#> | bitbucket/bart | bitbucket/bbcontacts |
#> | bitbucket/benchmarks | bitbucket/bioa |
#> | bitbucket/biobranch | bitbucket/bioescorte-suggestion |
#> | bitbucket/biofilmanalyzer | bitbucket/bioner |
#> | bitbucket/biosubg | bitbucket/biotransformerjar |
#> | bitbucket/brainformat | bitbucket/cabsdock |
#> | bitbucket/cabsflex | bitbucket/cafe |
#> | bitbucket/catkern | bitbucket/caviarbf |
#> | bitbucket/ccmpred | bitbucket/cellsandmachines |
#> | bitbucket/cfs-toolbox | bitbucket/chemdistillerpython |
#> | bitbucket/chimiric | bitbucket/chromawalker |
#> | bitbucket/ciml-lib | bitbucket/cl-dash |
#> | bitbucket/classyfire-api | bitbucket/clonocalc-plot |
#> | bitbucket/comorbidity | bitbucket/cophesim |
#> | bitbucket/cutruntools | bitbucket/cypreact |
#> | bitbucket/cystine-stabilized-proteins | bitbucket/cytodx-study-code |
#> | bitbucket/cytostruct | bitbucket/dd-detection |
#> | bitbucket/ddr | bitbucket/decaf |
#> | bitbucket/deepscope | bitbucket/defcom |
#> | bitbucket/dendsort | bitbucket/densitycut-dev |
#> | bitbucket/depthfinder | bitbucket/digtyper |
#> | bitbucket/diprog | bitbucket/disconica |
#> | bitbucket/dmml | bitbucket/domainoid |
#> | bitbucket/drseq | bitbucket/dyss |
#> | bitbucket/elsa | bitbucket/em-dawid |
#> | bitbucket/enzymer | bitbucket/fast |
#> | bitbucket/fastsimbac | bitbucket/fbb |
#> | bitbucket/fimtyper | bitbucket/fimtyper-db |
#> | bitbucket/fit3d | bitbucket/flexscore |
#> | bitbucket/forqs | bitbucket/g-tris |
#> | bitbucket/gabi | bitbucket/galaxytoolfactory |
#> | bitbucket/genediseaserepositioning | bitbucket/genespider |
#> | bitbucket/genomemining | bitbucket/glbase |
#> | bitbucket/glycome-analytics-platform | bitbucket/glycoprofileassigner |
#> | bitbucket/godon | bitbucket/granger-causality |
#> | bitbucket/gsoa | bitbucket/hapzipper |
#> | bitbucket/hdgmcm | bitbucket/hgvs |
#> | bitbucket/hh-suite | bitbucket/hicapp |
#> | bitbucket/hogan | bitbucket/ht-altfrac |
#> | bitbucket/immunediversity | bitbucket/imondb |
#> | bitbucket/infiniumpurify | bitbucket/infusion |
#> | bitbucket/intervene | bitbucket/iso-ktsp |
#> | bitbucket/jaspar | bitbucket/jgi-sparc |
#> | bitbucket/jqcml | bitbucket/jra-src |
#> | bitbucket/kernelsvmspark | bitbucket/kit |
#> | bitbucket/l.u.st | bitbucket/laser-release |
#> | bitbucket/last-split-pe | bitbucket/ldetect |
#> | bitbucket/ldetect-data | bitbucket/libfmftsaxs |
#> | bitbucket/libsleipnir.bitbucket.org | bitbucket/lipidhunter |
#> | bitbucket/locality | bitbucket/logminer |
#> | bitbucket/m2lite | bitbucket/mageck-nest |
#> | bitbucket/mageck-vispr | bitbucket/magicmicrorna |
#> | bitbucket/md-analysis-with-matlab | bitbucket/mechrna |
#> | bitbucket/metabat | bitbucket/metamarker |
#> | bitbucket/metamodules | bitbucket/metaphinder |
#> | bitbucket/metaprob | bitbucket/mgmapper |
#> | bitbucket/micomplete | bitbucket/miraw |
#> | bitbucket/mistrvar | bitbucket/mlm-gs-supplement |
#> | bitbucket/mngsg | bitbucket/moleculedatabaseframework |
#> | bitbucket/monovar | bitbucket/mrmplusgui |
#> | bitbucket/mugbas | bitbucket/mulcch |
#> | bitbucket/mutationmotif | bitbucket/mzjava |
#> | bitbucket/neri | bitbucket/nightshift |
#> | bitbucket/norgal | bitbucket/nsclc-paper |
#> | bitbucket/omics-pipe | bitbucket/oncodriveclustl |
#> | bitbucket/oncorep | bitbucket/orange-reliability |
#> | bitbucket/pancanceramaretto | bitbucket/pbrit |
#> | bitbucket/percolator-upgrade | bitbucket/phd |
#> | bitbucket/pheno-deep-counter | bitbucket/phosfox |
#> | bitbucket/phylogenize | bitbucket/phylogenomic-dataset-construction |
#> | bitbucket/phyloskeleton | bitbucket/phyparts |
#> | bitbucket/pia | bitbucket/pipit |
#> | bitbucket/pli | bitbucket/profileseq |
#> | bitbucket/proteogenomics | bitbucket/protie |
#> | bitbucket/protwis | bitbucket/purge-haplotigs |
#> | bitbucket/pymonaco | bitbucket/pyseqlab |
#> | bitbucket/qc-analysis | bitbucket/qtlsearch |
#> | bitbucket/rawmsa | bitbucket/read |
#> | bitbucket/readdi | bitbucket/remixt |
#> | bitbucket/repgenhmm | bitbucket/resistome-release |
#> | bitbucket/rgaugury | bitbucket/rna-motifs |
#> | bitbucket/rppa-preprocess | bitbucket/rsbiodiv |
#> | bitbucket/rucs | bitbucket/samu661/fsh/overview |
#> | bitbucket/sandpuma | bitbucket/scavager |
#> | bitbucket/scg | bitbucket/sensa |
#> | bitbucket/seql-nrps | bitbucket/sequence-shape |
#> | bitbucket/shades | bitbucket/shoelaces |
#> | bitbucket/simlord | bitbucket/sist-codes |
#> | bitbucket/sl1p | bitbucket/smart-viewpoint-computation-lib |
#> | bitbucket/sorting-by-network-completion | bitbucket/sparcc |
#> | bitbucket/sparkseq | bitbucket/splot |
#> | bitbucket/spurio | bitbucket/srg-extractor |
#> | bitbucket/stereodist | bitbucket/subcons-web-server |
#> | bitbucket/suppa | bitbucket/svd-phy |
#> | bitbucket/svist4get | bitbucket/taxmapper |
#> | bitbucket/tcellxtalk | bitbucket/tpes |
#> | bitbucket/triovis | bitbucket/trust |
#> | bitbucket/vcf2networks | bitbucket/vdjpuzzle2 |
#> | bitbucket/venomix | bitbucket/virus-vg |
#> | bitbucket/vispa2 | bitbucket/visualmcmc |
#> | bitbucket/vptissue | bitbucket/vsclust |
#> | bitbucket/wanding/duprecover/overview | bitbucket/warpiv |
#> | bitbucket/whatshap | bitbucket/xglycscan |
#> | bitbucket/xpiwit | bowtie |
#> | bowtie2 | bpipe |
#> | breakdancer | breakmer |
#> | breakpointsurveyor | brie |
#> | bwa | bystro |
#> | bzip2 | caveman |
#> | cdeep3m | cellfishing.jl |
#> | cellprofiler | cellsius |
#> | cesa | chia-pet2 |
#> | chicmaxima | chimeraviz |
#> | chromhmm | chromtime |
#> | chromvar | chronqc |
#> | circbrain | cistopic |
#> | clonealign | clustergrammer |
#> | cn-learn | cnvkit |
#> | cnvnator | conbase |
#> | confined | conos |
#> | cromwell | curl |
#> | dart | dash |
#> | db/annovar | db/annovar-1000g |
#> | db/annovar-ensgene | db/annovar-knowngene |
#> | db/annovar-noidx | db/annovar-refgene |
#> | db/appris | db/atcircdb |
#> | db/awesome | db/biosystems |
#> | db/cancer-hotspots | db/cancersplicingqtl |
#> | db/cellmarker | db/cgi |
#> | db/circbase | db/circnet |
#> | db/circrnadb | db/civic |
#> | db/clingov | db/consensuspathdb |
#> | db/cscd | db/dbsno |
#> | db/dcdb | db/denovo-db |
#> | db/dgidb | db/diseaseenhancer |
#> | db/eggnog | db/ewasdb |
#> | db/exorbase | db/expression-atlas |
#> | db/exsnp | db/fantom-cage-peaks |
#> | db/fantom-co-expression-clusters | db/fantom-enhancers |
#> | db/fantom-motifs | db/fantom-ontology |
#> | db/fantom-tss-classifier | db/funcoup |
#> | db/fusiongdb | db/gwas-catalog |
#> | db/hgnc | db/hmdb |
#> | db/hpdi | db/hpo |
#> | db/inbiomap | db/instruct |
#> | db/interpro | db/islandviewer |
#> | db/journal-doaj | db/lnc2cancer |
#> | db/lncediting | db/lncrnadisease |
#> | db/mircancer | db/mirdb |
#> | db/mirnest | db/mirtarbase |
#> | db/mndr | db/msdd |
#> | db/omim-open | db/omim-private |
#> | db/oncokb | db/oncomirdb |
#> | db/oncotator | db/pancanqtl |
#> | db/phosphonetworks | db/pmkb |
#> | db/proteinatlas | db/rbp-var |
#> | db/rbpdb | db/rddpred |
#> | db/redoxdb | db/remap |
#> | db/remap2 | db/rsnp3 |
#> | db/rvarbase | db/sedb |
#> | db/seecancer | db/seeqtl |
#> | db/sm2mir | db/srnanalyzer |
#> | db/tumorfusions | db/ucsc-cytoband |
#> | db/ucsc-dnase-clustered | db/ucsc-ensgene |
#> | db/ucsc-knowngene | db/ucsc-refgene |
#> | db/ucsc-tfbs-clustered | db/varcards |
#> | dca | deepcell-tf |
#> | deepnovo-dia | deepvariant |
#> | delly | detin |
#> | divers | doc/awesome-single-cell |
#> | doc/awosome-bioinformatics | doc/phatdocs |
#> | doc/pypdb-docs | doc/splatter-paper |
#> | doc/squigglekitdocs | doc/trackviewer |
#> | doc/visordoc | dreg |
#> | dropclust | dstruct |
#> | easeq | easysvg |
#> | echarts | effusion |
#> | f-sclvm | facets |
#> | fastp | fastq-tools |
#> | fastqc | fastx-toolkit |
#> | fatotwobit | feast |
#> | fmriprep | forge |
#> | freebayes | freec |
#> | fusioncatcher | g2s |
#> | gatk-bundle | gatk4 |
#> | gdc-client | gemini |
#> | genomedisco | genomeuplot |
#> | genvisr | geogrid |
#> | ggdag | ggseqlogo |
#> | ggthemr | giggle |
#> | github/13check-rna | github/16gt |
#> | github/2kplus2 | github/2matrix |
#> | github/2stepqa | github/3d-printed-radiographic-test-tools |
#> | github/3dchromatin-replicateqc | github/3dec |
#> | github/3dface | github/3dmax |
#> | github/3dpatch | github/435271 |
#> | github/4d-nucleome-analysis-toolbox | github/4dassign |
#> | github/4pipe4 | github/aalto-ics-kepaco |
#> | github/aascatterplot | github/abb |
#> | github/abbyyan3/bhglm | github/abc |
#> | github/abdominal-mr-phantom | github/abis |
#> | github/able | github/abmda |
#> | github/abra | github/abra2 |
#> | github/abscan | github/absnf |
#> | github/abus-code | github/ac-diamond |
#> | github/ac-pca | github/accumulate |
#> | github/aces | github/acgh-viewer |
#> | github/aci | github/acnc-dame |
#> | github/acnviewer | github/acp-dl |
#> | github/actinn | github/ad-zcc |
#> | github/adapt-mix | github/adaptive-geometric-search-for-protein-design |
#> | github/adaptivehm | github/adcp |
#> | github/addit | github/additive-fnnrw |
#> | github/addo | github/aditya-88/asap |
#> | github/adjutant | github/admixem |
#> | github/admixture-graph | github/ads-hcspark |
#> | github/advanced-multiloops | github/adversarial-relation-classification |
#> | github/aether | github/afcluster |
#> | github/affylumcna | github/affypipe |
#> | github/afresh | github/agennt |
#> | github/aggregategenefunctionprediction | github/agin |
#> | github/agotron-detector | github/agplus |
#> | github/agrp | github/ags-and-acn-tools |
#> | github/airnet-pytorch | github/aivar |
#> | github/ajia | github/aksmooth |
#> | github/akt-selective | github/al3c |
#> | github/alarm | github/aldenleung/omtools |
#> | github/ale | github/algorithm-performance-analysis |
#> | github/algorithmcomparison | github/alidetection |
#> | github/alifreefold | github/align-linguistic-alignment |
#> | github/align3d | github/alignerboost |
#> | github/aligngraph | github/alleleanalyzer |
#> | github/allelic-inclusion | github/allo |
#> | github/allonkleinlab/spring | github/almostsignificant |
#> | github/alo-algorithm-for-kidney-exchanges | github/alpha |
#> | github/alpha-centauri | github/als-deeplearning |
#> | github/althap | github/althapalignr |
#> | github/altre | github/alview |
#> | github/amap | github/amas |
#> | github/amda | github/amplimap |
#> | github/amplisolve | github/ampumi |
#> | github/amylogramanalysis | github/ananas |
#> | github/ananke | github/anaquin |
#> | github/anatomy-modality-decomposition | github/ancestral-blocks-reconstruction |
#> | github/ancestry-viz | github/ancis-pytorch |
#> | github/and | github/andi |
#> | github/andy-s-algorithm | github/aneuvis |
#> | github/angsd-wrapper | github/angular-ripleys-k |
#> | github/ann-glycolysis-flux-prediction | github/ann-solo |
#> | github/anndata | github/annocript |
#> | github/annopeak | github/annotatr |
#> | github/anonimme | github/antibody-2019 |
#> | github/antibodyinterfaceprediction | github/anticancer-peptides-review |
#> | github/antigenpredictor | github/antivpp |
#> | github/aozan | github/ap11-samifier |
#> | github/apero | github/aphid |
#> | github/apinet | github/apostl |
#> | github/apples | github/appscangeo |
#> | github/aptablocks | github/aqua |
#> | github/ar-pred-source | github/arachne |
#> | github/arcas | github/arcashla |
#> | github/architect | github/arcs |
#> | github/ardiss | github/argdit |
#> | github/argon | github/args-oap-v2.0 |
#> | github/argyle | github/arioc |
#> | github/ark | github/arl-eegmodels |
#> | github/armsd | github/arnapipe |
#> | github/arraylasso | github/arraymaker |
#> | github/artgan | github/artifusion |
#> | github/artmap | github/arts |
#> | github/aryana-aligner | github/asafe |
#> | github/asap | github/asar |
#> | github/asciigenome | github/asd-genes-prediction |
#> | github/asdpex | github/aselux |
#> | github/asgart | github/ashr |
#> | github/asja | github/aspc |
#> | github/assemblosis | github/assemblytics |
#> | github/assexon | github/assign |
#> | github/assocplots | github/astrap |
#> | github/atac-pipe | github/atc |
#> | github/aten | github/atlas-rat |
#> | github/atlases | github/atma |
#> | github/atminter | github/atropos |
#> | github/atsnp | github/att-chemdner |
#> | github/att-chemprot | github/augmentor |
#> | github/augmentor.jl | github/author-detection |
#> | github/autoimmune-research | github/av-segmentation |
#> | github/avesim | github/awfisher |
#> | github/awol-mrf | github/axe |
#> | github/axondeepseg | github/axonpacking |
#> | github/axonseg | github/azahar |
#> | github/b-lore | github/b-mis-normalization |
#> | github/b-nem | github/backclip |
#> | github/bacpacs | github/bactdating |
#> | github/bacterial-colonization-model | github/bacteriamslf |
#> | github/bactsnp | github/badlands-model |
#> | github/badock | github/baerhunter |
#> | github/bagse | github/baitfisher-package |
#> | github/baldr | github/bam-abs |
#> | github/bam2ssj | github/bamchop |
#> | github/bamclipper | github/bamfa |
#> | github/bamgineer | github/bamhash |
#> | github/bamixchecker | github/bamse |
#> | github/bamtools | github/barnaba |
#> | github/bart-bma | github/bartender-1.1 |
#> | github/basics | github/batch-ge |
#> | github/batcheffectremoval | github/batchqc |
#> | github/batmeth2 | github/bayescat |
#> | github/bayesembler | github/bayesiandatafusion.jl |
#> | github/bayesianpgmm | github/bayexer |
#> | github/baynorm | github/baynorm-papercode |
#> | github/bbarker/falcon | github/bbgp |
#> | github/bbknn | github/bc5cidtask |
#> | github/bc6pm-hrnn | github/bcalm |
#> | github/bcftools | github/bcgtree |
#> | github/bcigepred | github/bcool |
#> | github/bcrystal | github/bdbg |
#> | github/bdc | github/bdchemo |
#> | github/bdmma | github/bdmma-macos |
#> | github/bdss | github/beacon-network-inference |
#> | github/beam | github/beam-propagation-method |
#> | github/bel-enrichment | github/bel2abm |
#> | github/bemkl-rbps | github/benchmark-models |
#> | github/benchmarking-tsdiscretizations | github/benchmarkncvtools |
#> | github/bereta | github/bermuda |
#> | github/besst | github/betaboost |
#> | github/betaserpentine | github/betaturn18 |
#> | github/beyondbinaryparcellationdata | github/bfc |
#> | github/bfmem | github/bgsa |
#> | github/bgsc | github/bgt |
#> | github/bhklab | github/bib |
#> | github/bicolor | github/biddsat |
#> | github/bide-2d | github/bidifuse |
#> | github/bigbwa | github/bigdatagenomics/mango |
#> | github/bigld | github/bigred |
#> | github/bilouvain | github/bimberlab/discvrseq |
#> | github/bin-passing-analyzer | github/bin3c |
#> | github/bindash | github/bindpredict |
#> | github/binm | github/binning |
#> | github/binning-refiner | github/bio-gradient-descent |
#> | github/bio-quinn2013 | github/bio-scores |
#> | github/bio-tradis | github/bio3d |
#> | github/bioattribution | github/biobert |
#> | github/biobert-pretrained | github/bioblend |
#> | github/bioc | github/biocaddie |
#> | github/biocaddie2016mayodata | github/biocemid |
#> | github/bioclipse | github/biocompute-objects |
#> | github/biocontainers | github/biocppi-extraction |
#> | github/biocreativevi-bioid-assignment | github/biodataome |
#> | github/biodiscml | github/bioflosoftware |
#> | github/biograph | github/bioinfo |
#> | github/bioinformatics-sourcecode | github/bioinstaller |
#> | github/biojava-tutorial | github/biojs |
#> | github/biojs-io-biom | github/biokeen |
#> | github/biolab/red | github/biolitmap |
#> | github/biomaj2galaxy | github/biomake |
#> | github/biomartr | github/biomedical-corpora |
#> | github/biomedical-qa | github/biomethyl |
#> | github/biomsef | github/bioner-cross-sharing |
#> | github/bionet-mining | github/bionetgen |
#> | github/bionev | github/bionitio |
#> | github/bionmf-gpu | github/bioont-search-benchmark |
#> | github/biopartsbuilder | github/biopartsdb |
#> | github/biopax.viz | github/bioposdep |
#> | github/biopyramid | github/bioqueue |
#> | github/bioruby-svgenes | github/bioruby-ucsc-api |
#> | github/bioshake | github/biostructmap |
#> | github/biostructurem | github/biosual |
#> | github/biotite | github/biotoolscompose |
#> | github/bipspi | github/biren |
#> | github/bispark | github/bisque |
#> | github/bits | github/bitseq |
#> | github/bitseqvb-benchmarking | github/bives-statsgenerator |
#> | github/biwalklda | github/bixgboost |
#> | github/bjass | github/blant |
#> | github/blasst | github/blastgraph |
#> | github/blastgui | github/blastjs |
#> | github/blca | github/blend4php |
#> | github/blisar | github/blmrm |
#> | github/blobology | github/blobsplorer |
#> | github/bluesnp | github/bmdexpress-2 |
#> | github/bmf-qsar | github/bminerimportancebacillus |
#> | github/bmsim | github/bnbr |
#> | github/bner | github/bnnr |
#> | github/bnrr | github/boa |
#> | github/bofdat | github/boiler |
#> | github/boltzmannmachines.jl | github/bonita |
#> | github/boolean-t2dm | github/boolesim |
#> | github/boost-hic | github/boostgapfill |
#> | github/bootejtk | github/boss |
#> | github/bowtie-scaling | github/bp-quant |
#> | github/bpbi | github/bpipe |
#> | github/bpp | github/bprmeth |
#> | github/bpsc | github/brainimager |
#> | github/branchinggps | github/brapes |
#> | github/brca-analyzer | github/breakid |
#> | github/breakpointer | github/breakpointsurveyor |
#> | github/breastcancerclassifier | github/bret-analyzer |
#> | github/brides | github/bridge |
#> | github/bridges | github/brm |
#> | github/broad-peaks | github/broccoli |
#> | github/bronchomix | github/browniealigner |
#> | github/browniecorrector | github/browsevcf |
#> | github/bruno | github/brwhnha |
#> | github/bs-snper | github/bsevaluationremotesceneir |
#> | github/bstools | github/bsvf |
#> | github/bth | github/bts-dsn |
#> | github/btw | github/btyper |
#> | github/bulkvis | github/bvnlabscattome |
#> | github/bvp-pred-unb | github/bwas |
#> | github/bwmr | github/c-deva |
#> | github/c-hmm | github/c-intersecture |
#> | github/c3d | github/caars |
#> | github/cabergh/ebdims | github/cadrres |
#> | github/cafe | github/cafe-plugin |
#> | github/cafemocha | github/caffe-3d-faster-rcnn |
#> | github/cafu | github/calib |
#> | github/calour | github/calq |
#> | github/cam | github/camisim |
#> | github/camstyle | github/canalizingpower |
#> | github/canary | github/cancer-subtyping |
#> | github/cancerdiscover | github/candi |
#> | github/canet | github/cansnper |
#> | github/canvas | github/canvasdb |
#> | github/capc-map | github/capsim |
#> | github/capsnet-ptm | github/capssa |
#> | github/cardiacpbpk | github/care-rcortex |
#> | github/carpools | github/cartoon-network |
#> | github/casas | github/case-bbb-prediction-data |
#> | github/casian | github/caslocusanno |
#> | github/casmap | github/casper |
#> | github/caspo | github/caspo-ts |
#> | github/castin | github/catana |
#> | github/catfish | github/cath-tools |
#> | github/causaltrail | github/cbig |
#> | github/cc-mds | github/ccbgpipe |
#> | github/ccc | github/cclasso |
#> | github/cd-trace | github/cddapp |
#> | github/cddforfmri | github/cdpc |
#> | github/cell-maps | github/cellminercompanion |
#> | github/cellmissy | github/cellnomenclaturestudy |
#> | github/cellprofiler-analyst | github/cellsim |
#> | github/celltrans | github/cepics |
#> | github/cerebro | github/cerebroapp |
#> | github/cerena | github/cesar |
#> | github/cesar2.0 | github/cfdnapattern |
#> | github/cfnet | github/cgan |
#> | github/cgdm | github/cgheliparm |
#> | github/cglasso | github/cgmisc |
#> | github/cgrtools | github/cgvr |
#> | github/chainrank | github/chance |
#> | github/changlab | github/chaperism |
#> | github/charger | github/checkmyblob |
#> | github/checkmyindex | github/chem-preview |
#> | github/chemogenomicalg4dtipred | github/chemps2 |
#> | github/chemts | github/chewbbaca |
#> | github/chexmix | github/chfs |
#> | github/chia-pet2 | github/chiapop |
#> | github/chicdiff | github/chiimp |
#> | github/chilay | github/chilin |
#> | github/chimeraviz | github/chimericognizer |
#> | github/chimerscope | github/chippcr |
#> | github/chipsad | github/chipseqspikeinfree |
#> | github/chipulate | github/chipwig-v2 |
#> | github/chmannot | github/chopbaicontact:birte.kehr@decode.is |
#> | github/chopstitch | github/chordomics |
#> | github/christopherblum | github/chroma-clade |
#> | github/chromatra | github/chromdet |
#> | github/chromdragonn | github/chromozoom |
#> | github/chronqc | github/cidr |
#> | github/cima | github/circacompare |
#> | github/circadb | github/circcode |
#> | github/circdeep | github/circmeta |
#> | github/circompara | github/circsplice |
#> | github/circtools | github/circuitservice |
#> | github/cirgo | github/cissticp |
#> | github/cistopic | github/cjbitseq |
#> | github/clairvoyante | github/clamms |
#> | github/classifier-selection-code | github/cld |
#> | github/clickx | github/clifinder |
#> | github/cline | github/clinical-citation-sentiment |
#> | github/clinical-sentences | github/cliquems |
#> | github/clj-biosequence | github/clockstarg |
#> | github/clonefinderapi | github/clonevol |
#> | github/cloops | github/close |
#> | github/cloudauthz | github/cloudbrush |
#> | github/cloudforest | github/cloudneo |
#> | github/cloudphylo | github/cluesv1 |
#> | github/clumsid | github/clusdca |
#> | github/clust | github/cluster-wgs-data |
#> | github/clusterdv | github/clustermap |
#> | github/clustermq | github/clustermq-performance |
#> | github/clustertad | github/cmap |
#> | github/cmb-labeler | github/cmfsm |
#> | github/cmonkey2 | github/cmsa |
#> | github/cnanalysis450k | github/cnape |
#> | github/cnara | github/cnefinder |
#> | github/cner | github/cnet |
#> | github/cnn | github/cnn-brain-strains |
#> | github/cnn-smoothie | github/cnr |
#> | github/cnr-analyses | github/cnspector |
#> | github/cnt-ilp | github/cnv-prioritization |
#> | github/cnvalidator | github/cnvkit |
#> | github/co-fuse | github/coac |
#> | github/coala | github/cobamp |
#> | github/cobasi | github/cobia |
#> | github/cobralab-atlases | github/cobratoolbox |
#> | github/cocacola | github/cocos |
#> | github/cocoscore | github/coda |
#> | github/codeml-modl | github/codonhmm |
#> | github/coelho2015-netsdetermination | github/coge |
#> | github/cogena | github/cognate |
#> | github/cogstack | github/cola |
#> | github/collector | github/colliderapp |
#> | github/colocalizr | github/colocr |
#> | github/colormap | github/combat-tb |
#> | github/combination-index | github/combine-cnn-enhancer-and-promoters |
#> | github/combined-pvalues | github/combiningdependentpvalues |
#> | github/come | github/comer |
#> | github/cometa | github/cometsc |
#> | github/comida | github/comm |
#> | github/comorbidity4j | github/comoto-pasteur-fr |
#> | github/comparisonfastafiles | github/compath |
#> | github/complete-striped-smith-waterman-library | github/complexviewer |
#> | github/compms2miner | github/compomics-utilities |
#> | github/compound-eye-simulator | github/compressgv |
#> | github/computational | github/computel |
#> | github/comsa | github/concise |
#> | github/condition-dependent-correlation-subgroups-ccs | github/condo |
#> | github/conffuse | github/confidence-information-ontology |
#> | github/confindr | github/confined |
#> | github/confit | github/confold2 |
#> | github/conformationalchange | github/conics |
#> | github/connjur-sandbox | github/connor-lab/vapor |
#> | github/conpair | github/consensus |
#> | github/consensx.itk.ppke.hu | github/consexpression |
#> | github/conspecifix | github/contaminationx |
#> | github/contextual-regression-for-circrna | github/convlstmforgr |
#> | github/cooler | github/copal |
#> | github/copmem | github/coptea |
#> | github/cordova | github/coretracker |
#> | github/cornas | github/corpora |
#> | github/correlation-between-rna-seq-and-rrbs | github/cosmomvpa |
#> | github/cosmos | github/cosr |
#> | github/counting-consistent-sub-dag | github/countsimqc |
#> | github/couplenet | github/coverview |
#> | github/cox-nnet | github/coxboost |
#> | github/cpdock | github/cpi-em |
#> | github/cpinsim | github/cpm-cytoscape |
#> | github/cpr | github/craftgbd |
#> | github/cram-js | github/crdata |
#> | github/creamino | github/cregulome |
#> | github/crenet | github/crisflash |
#> | github/crispr | github/crispr-dav |
#> | github/crisprdisco | github/crispritz |
#> | github/crisprmatch | github/crisprpred |
#> | github/crm | github/croco |
#> | github/crossbar-net | github/crosslink-viewer |
#> | github/crossmapper | github/crossplan |
#> | github/crowd-cid-relex | github/crowdnodnet |
#> | github/crtl | github/crumble |
#> | github/cryfa | github/cryostage |
#> | github/csar | github/csbfinder |
#> | github/cscoretool | github/csdm |
#> | github/csi-utr | github/csmd |
#> | github/cssscl | github/csvd |
#> | github/ctap | github/ctc-screening-cnn |
#> | github/ctcf-mp | github/ctdquerier |
#> | github/cuclark | github/cudagsea |
#> | github/cudampf | github/cuddi |
#> | github/cuedemotion | github/cufusion |
#> | github/cumulative-fourier-power-spectrum | github/cupsoda |
#> | github/curatio | github/curatr |
#> | github/cusnn | github/cwdtw |
#> | github/cwords | github/cwsdtwnano |
#> | github/cymer | github/cymira |
#> | github/cysbar | github/cysmotifsearcher |
#> | github/cytobackbone | github/cytocompare |
#> | github/cytofmerge | github/cytokit |
#> | github/cytometry-clustering-comparison | github/cyversewarwick |
#> | github/d-gex | github/d2r-codes |
#> | github/d2sbin | github/d3m |
#> | github/d3ner | github/dace |
#> | github/dacum | github/dada2 |
#> | github/dafga | github/dag-viewer-biojs |
#> | github/dagitty | github/dairydb |
#> | github/daisy | github/dalliance |
#> | github/dangertrack | github/danq |
#> | github/dante | github/dart |
#> | github/darts | github/dasc |
#> | github/data-example | github/data-in-brief-influence |
#> | github/data-of-genome-rearrangement | github/data-prism |
#> | github/data2dynamics | github/databaseui |
#> | github/datamonkey-js | github/datarlatools |
#> | github/dataset-retrieval-pipeline | github/datasets |
#> | github/datasink | github/dave-the-scientist |
#> | github/dbc | github/dbgap2x |
#> | github/dbh | github/dbtora |
#> | github/dcars | github/dcaxl |
#> | github/dcj-c | github/dcm |
#> | github/dcmqi | github/dcnlp |
#> | github/dde-bd | github/ddot |
#> | github/ddpcrclust | github/ddpcrvis |
#> | github/ddsae | github/ddseeker |
#> | github/dearwxpub | github/debga |
#> | github/debgr | github/deblender |
#> | github/deblur | github/debruijn-motif |
#> | github/debwt | github/debwtcontact |
#> | github/decent | github/decometdia |
#> | github/decon1d | github/decontam |
#> | github/deconvolution-of-essential-gene-signitures | github/deconvseq |
#> | github/dectdec | github/deep-collaborative-filtering |
#> | github/deep-learning-examples | github/deep-plant |
#> | github/deep-resp-forest | github/deepacet |
#> | github/deepaffinity | github/deepathology |
#> | github/deepbinner | github/deepboost |
#> | github/deepbound | github/deepcas9 |
#> | github/deepchem | github/deepcircode |
#> | github/deepcnf-auc | github/deepcoil |
#> | github/deepcon | github/deepconv-dti |
#> | github/deepcov | github/deepcropping |
#> | github/deepcrystal | github/deepcseqsite |
#> | github/deepcytof | github/deepdiffraction |
#> | github/deepdive-genegene-app | github/deepdna |
#> | github/deepdom | github/deepdr |
#> | github/deepdrug3d | github/deepdta |
#> | github/deepem3d | github/deepexpression |
#> | github/deepfe-ppi | github/deepfold |
#> | github/deepfr | github/deepgo |
#> | github/deephint | github/deephistone |
#> | github/deephlapan | github/deepimpute |
#> | github/deepisofun | github/deepligand |
#> | github/deeplightfieldssr | github/deepm6aseq |
#> | github/deepmetapsicov | github/deepmirtar-sda |
#> | github/deepmito | github/deepmspeptide |
#> | github/deepnet-rbp | github/deepnf |
#> | github/deeppasta | github/deeppath |
#> | github/deepphos | github/deeppicker-python |
#> | github/deepppisp | github/deepram |
#> | github/deepred | github/deeprtplus |
#> | github/deepseenet | github/deepseqpan |
#> | github/deepsequence | github/deepsignal |
#> | github/deepsimulator | github/deepslide |
#> | github/deepsnr | github/deepsnvminer |
#> | github/deept3 | github/deepubi |
#> | github/deepubiquitylation | github/deerect-polya |
#> | github/defor | github/defume |
#> | github/degps | github/degsm |
#> | github/deicode | github/deisom |
#> | github/delta | github/delta-statistic |
#> | github/deltabs | github/demix-q |
#> | github/demixtallmaterials | github/dendropy |
#> | github/dendrosplit | github/denoptim |
#> | github/densitypath | github/deopen |
#> | github/depecher | github/deplanckelab/asap |
#> | github/deplogo | github/deploid |
#> | github/deploid-r | github/depop |
#> | github/derep-np | github/derfinder |
#> | github/description-extractor | github/descs-standalone |
#> | github/designmetabolicrnalabeling | github/designmpra |
#> | github/desir | github/destin |
#> | github/detect-v2 | github/detectron |
#> | github/detime | github/dets |
#> | github/deuterater | github/deuteros |
#> | github/deviate | github/dexsi |
#> | github/dfim | github/dfm |
#> | github/dgcox | github/dgendoo |
#> | github/dgenies | github/dgmdl |
#> | github/dhaka | github/diagram |
#> | github/dialignr | github/dib-lab/khmer |
#> | github/dieterich-lab | github/differential-mutation-analysis |
#> | github/differential-privacy-genomic-inference-attack | github/diffexpy |
#> | github/diffgraph | github/diffnetfdr |
#> | github/diffpop | github/diffsplicing |
#> | github/diffuse | github/diffusivedynamics |
#> | github/digitalcellsorter | github/dinamo |
#> | github/dinar | github/dingo |
#> | github/dinosaur | github/dipartite |
#> | github/disambiguate | github/discoal |
#> | github/discomark | github/discordant |
#> | github/discorhythm | github/discoversl |
#> | github/disdrugpred | github/disease-similarity-fusion |
#> | github/diseasediscovery | github/diseaseextract |
#> | github/dislncrf | github/dispot |
#> | github/dispredict-v1.0 | github/disseqt.jl |
#> | github/distanced | github/distributedlearningpredictor |
#> | github/distruct | github/disvis |
#> | github/dive | github/diversity |
#> | github/divpop | github/divvier |
#> | github/django-chicp | github/dlbi |
#> | github/dligand2 | github/dlprb |
#> | github/dmbc | github/dmcm |
#> | github/dmdeepm6a1.0 | github/dmdtoolkit |
#> | github/dmfinder | github/dmi |
#> | github/dmrfinder | github/dmsc |
#> | github/dna-nn | github/dna-rchitect |
#> | github/dnabinding | github/dnacc |
#> | github/dnadataaugmentation | github/dnadu |
#> | github/dnam-based-age-predictor | github/dnapi |
#> | github/dnascan | github/dnascent |
#> | github/dnbfa | github/dncon2 |
#> | github/dnea | github/dnn-hmm |
#> | github/do-ms | github/doc2hpo |
#> | github/docker-galaxy-hicexplorer | github/docker-rrbssim |
#> | github/dockq | github/docks |
#> | github/doepipeline | github/dogfinder |
#> | github/dognet | github/domex |
#> | github/doraemon | github/doritool |
#> | github/dot2dot | github/dove |
#> | github/downloads | github/dp-gp-cluster |
#> | github/dp-representation-transfer | github/dpetstep |
#> | github/dphansti/coral | github/dphansti/mango |
#> | github/dpm-lgcp | github/dppi |
#> | github/dpre | github/dptdt |
#> | github/dpuc2 | github/dqbioinformatics |
#> | github/dr-thermo | github/dr2di |
#> | github/draco-stem | github/drdiff |
#> | github/dream-gene-essentiality-challenge | github/dreamtools |
#> | github/dreg | github/drimpute |
#> | github/driverml | github/driversub |
#> | github/drl4cellmovement | github/drme |
#> | github/dropclust | github/drseq2 |
#> | github/drug-drug-interaction | github/drug-target-prediction |
#> | github/drugcombination | github/drugcombinationprediction |
#> | github/drugdiseasenet | github/drugtargetor |
#> | github/drugthatgene | github/drugz |
#> | github/drvae | github/drwh |
#> | github/dsm-framework | github/dspred |
#> | github/dt-all | github/dto |
#> | github/dtwscore | github/duett |
#> | github/dugongbioinformatics | github/duphold |
#> | github/dwcox | github/dycluster |
#> | github/dyconet | github/dynadup |
#> | github/dynalogo | github/dynamicdbg |
#> | github/dysprog | github/e-driver |
#> | github/e-prospect | github/e2fm |
#> | github/eagle | github/earomatic |
#> | github/easycodeml | github/ebcall |
#> | github/ebgsea | github/ebi-metabolights |
#> | github/ebolavirussdpsbioinformatics2019 | github/ebwt2snp |
#> | github/echo | github/ecogems |
#> | github/ecpred | github/edetect |
#> | github/edge-in-tcga | github/edgescaping |
#> | github/edlib | github/eecog-comp |
#> | github/eeg-annotate | github/eeg-spindles |
#> | github/effect-of-the-operational-parameters | github/effusion |
#> | github/efindsite | github/efp-seq-browser |
#> | github/egad | github/egcpi |
#> | github/ehr | github/eigen-scripts |
#> | github/eklipse | github/el-smurf |
#> | github/electron-micrograph-denoiser | github/electronfactors |
#> | github/elemcor | github/elm |
#> | github/elmeri | github/emase |
#> | github/embeddings-reproduction | github/emblmygff3 |
#> | github/emclarity | github/emdn |
#> | github/emdunifrac | github/emep |
#> | github/emerald | github/emirge |
#> | github/emmckmer | github/emolfrag |
#> | github/emringer | github/emsar |
#> | github/emwer | github/encoded |
#> | github/end2end-all-conv | github/enigma |
#> | github/enimpute | github/ennet |
#> | github/enscat | github/ensembl-rest |
#> | github/ensembler | github/enve |
#> | github/enzynet | github/epa-ng |
#> | github/epanet-dev | github/epee |
#> | github/epem-gmm | github/epga2 |
#> | github/ephagen | github/epiabc |
#> | github/epic2 | github/epicode |
#> | github/epicom | github/epicseg |
#> | github/epidish | github/epigbs |
#> | github/epigraph | github/epilog |
#> | github/epinem | github/epiprofile2.0-family |
#> | github/epiq | github/episafari |
#> | github/episurg | github/epitracer |
#> | github/epivan | github/eplmi |
#> | github/epof | github/epooling |
#> | github/epsdc | github/epslasso |
#> | github/eqp-cluster | github/eqtloverlapper |
#> | github/eqtlseq | github/equation-generator |
#> | github/equivalent-junctions | github/equivariantnetworks |
#> | github/erd2 | github/error-correction |
#> | github/esigen | github/esmo |
#> | github/esp-dnn | github/espresso-research |
#> | github/esprit2 | github/estitics |
#> | github/etcomp | github/ethseq |
#> | github/etoxpred | github/eval |
#> | github/evcouplings | github/evidenceaggregateddriverranking |
#> | github/evidenceontology | github/eviltools |
#> | github/evntextrc | github/evoclust3d |
#> | github/evolclust | github/evolstruct-phogly |
#> | github/ewas-twin-simulation | github/ewca |
#> | github/exmachina | github/exondel |
#> | github/exonsuite | github/expansionhunter |
#> | github/explobatch | github/express-d |
#> | github/exranges | github/extramp |
#> | github/extrarg | github/extreme |
#> | github/exttada | github/ezmap |
#> | github/ezqsar | github/eztree |
#> | github/f-anogan | github/f3das |
#> | github/fab-phmm | github/facets |
#> | github/factorial-hmm | github/factorizations |
#> | github/fait | github/falco |
#> | github/famplex | github/faot |
#> | github/fardeep | github/fasp |
#> | github/fast | github/fast-gep |
#> | github/fast-lmm | github/fastbaps |
#> | github/fastbma | github/fastderain |
#> | github/fastheatmap | github/fastlzerospikeinference |
#> | github/fastore | github/fastp |
#> | github/fastq-brew | github/fastqpuri |
#> | github/fastrfs | github/fastspar |
#> | github/fatslim | github/faucet |
#> | github/favites | github/fbdenovo |
#> | github/fbm | github/fcnv |
#> | github/fcs-point-correlator | github/fda-ars |
#> | github/feast | github/featureselect |
#> | github/feelnc | github/feizhe/pgs |
#> | github/fem | github/fermi |
#> | github/fermikit | github/fertility-gru |
#> | github/fetalfraction-snpimpute | github/few-shot-segmentation |
#> | github/fgcs17 | github/fiddlercrab.info |
#> | github/figs | github/filtus |
#> | github/fimtrack | github/findgco |
#> | github/findgse | github/findis-db |
#> | github/findr | github/fineradstructure |
#> | github/fiqt | github/fisheye-orb-slam |
#> | github/fishplot | github/fit-sne |
#> | github/fitild | github/fizzy |
#> | github/flaimapper | github/flas |
#> | github/flashpca | github/flashweave.jl |
#> | github/fldgen | github/flea-pipeline |
#> | github/flea-web-app | github/flexbar |
#> | github/flexgeo | github/flexicoclusteringpackage |
#> | github/flexidot | github/flexor |
#> | github/flib-coevo | github/flint |
#> | github/flnadd | github/floc |
#> | github/flowermorphology | github/flowgrid |
#> | github/flowlearn | github/flowpeaks |
#> | github/flowsom | github/flps |
#> | github/fluff | github/fluidigm2purc |
#> | github/fluka-ct | github/flycop |
#> | github/fmlc | github/fmoc |
#> | github/fmrat | github/fmtree |
#> | github/fnbtools | github/foldatlas |
#> | github/foresee | github/foreseqs |
#> | github/forwardgenomics | github/founder-sequences |
#> | github/fourrussiansrnafolding | github/fp2vec |
#> | github/fpkit | github/fqc |
#> | github/fqtools | github/fragalcode |
#> | github/fragbuilder | github/frama |
#> | github/framework | github/franklin |
#> | github/frcnn-cad | github/friends-and-family |
#> | github/frogs | github/fromage |
#> | github/fsda | github/fselector |
#> | github/fsepsa | github/fsmkl |
#> | github/fsqn | github/fssemr |
#> | github/fsva | github/fta |
#> | github/ftc | github/fuento |
#> | github/fuma | github/fumoso |
#> | github/functree-ng | github/fundus-fractal-analysis |
#> | github/fungap | github/funmap2 |
#> | github/funmappone | github/funnel-gsea-r-package |
#> | github/funpred-3.0 | github/funtoonorm |
#> | github/funvar | github/fusenet |
#> | github/fuseq | github/g-msr |
#> | github/g2p | github/g3lollipop.js |
#> | github/g4catchall | github/ga-bagging-svm |
#> | github/gac | github/galaxy |
#> | github/galaxy-rna-workbench | github/galaxydocker |
#> | github/gap | github/gapest |
#> | github/gappa | github/gappadder |
#> | github/gapreduce | github/garfield-ngs |
#> | github/garleek | github/garlic |
#> | github/gasol | github/gatc |
#> | github/gated-xnor | github/gatekeeper |
#> | github/gatk | github/gaudi |
#> | github/gavin-yinld | github/gaynor-sun-gbj-breast-cancer |
#> | github/gaze3dfix | github/gbgfa |
#> | github/gbs-pacecar | github/gbs-snp-crop |
#> | github/gbwt | github/gc |
#> | github/gcevobase | github/gcmdr |
#> | github/gcsa2 | github/gdcrnatools |
#> | github/ge-lda-survival | github/geck |
#> | github/ged-lab/khmer | github/gedfn |
#> | github/geiger-v2 | github/gembassy |
#> | github/gemini | github/gemmer |
#> | github/gempro | github/gemprot |
#> | github/gemse | github/gemsplice-code |
#> | github/gemtools | github/gencof |
#> | github/gene-block-evolution | github/gene-is |
#> | github/gene-surrounder | github/genecnv |
#> | github/geneevolve | github/genefu |
#> | github/genefuse | github/genegraphics |
#> | github/genenotebook | github/genepheno |
#> | github/genepopedit | github/genesthycan |
#> | github/genesurv | github/geneticscreen.jl |
#> | github/geneticthesaurus | github/gengis |
#> | github/genhap | github/genmap-comparator |
#> | github/gennet | github/geno-diver |
#> | github/genocore | github/genome-bin-tools |
#> | github/genome-maps | github/genome-sketching |
#> | github/genome-topology-network | github/genomealignmenttools |
#> | github/genomeartist | github/genomed3plot |
#> | github/genomedisco | github/genomeflow |
#> | github/genomemining | github/genomescope |
#> | github/genometester4 | github/genomeuplot |
#> | github/genomewarp | github/genomicgraphcoords |
#> | github/genomon-itdetector | github/genotype-corrector |
#> | github/genplay | github/genssi |
#> | github/georacle | github/george |
#> | github/georgettetanner | github/gep2pep |
#> | github/get-phylomarkers | github/getisdmr |
#> | github/gevitanalysisrelease | github/gfakluge |
#> | github/gfapy | github/gfaviz |
#> | github/gfcom | github/gff3toolkit |
#> | github/gfplain | github/gfusion |
#> | github/ggm-shrinkage | github/ggrasp |
#> | github/ggsashimi | github/ggtk |
#> | github/ggv | github/ggv-api |
#> | github/ghost-tree | github/ght |
#> | github/gi-cluster | github/gift |
#> | github/giggle | github/gimpute |
#> | github/gips | github/giremi |
#> | github/github-bioinformatics | github/github.com: |
#> | github/gkmexplain | github/gladiatox |
#> | github/glanet | github/glass |
#> | github/glep | github/glint |
#> | github/glmvc | github/glp |
#> | github/glsnn | github/glutton |
#> | github/glycanformatconverter | github/glycoseq |
#> | github/glycresoft | github/glyxtoolms |
#> | github/gm-cml | github/gma |
#> | github/gmalign | github/gmm-marker-tracking |
#> | github/gmrad | github/gms |
#> | github/gmxapi | github/gne |
#> | github/gneiss | github/gnetlmm |
#> | github/gnn | github/gnuplot-iostream |
#> | github/goatools | github/gobe |
#> | github/gobyweb2-plugins | github/goeckslab |
#> | github/gofeat | github/gokit |
#> | github/goldilocks | github/goleft |
#> | github/gooogle | github/gopher |
#> | github/gorampage | github/gospel |
#> | github/gotrapper | github/gpa-package |
#> | github/gpca | github/gpds |
#> | github/gpga | github/gpica |
#> | github/gpmat | github/gpmicrobiome |
#> | github/gppf | github/gppfst |
#> | github/gpqtlmapping | github/gprotpred |
#> | github/gpseudoclust | github/gpseudorank |
#> | github/gptime | github/gpu-daemon |
#> | github/gqt | github/grabb |
#> | github/graftm-gpkgs | github/grail |
#> | github/grailbio-bio | github/gram-cnn |
#> | github/grandprix | github/graph-annotation |
#> | github/graph2pro | github/graph2tab |
#> | github/graphaligner | github/graphlet-naming |
#> | github/graphmap | github/graphspace |
#> | github/grassmanncluster | github/greenwoodlab |
#> | github/grein | github/grep |
#> | github/grepsearch | github/gridlmm |
#> | github/grimm | github/grimon |
#> | github/grnmf | github/grnte |
#> | github/grnvbem | github/gromacs-mic |
#> | github/grompy | github/groot |
#> | github/grouper | github/groupk |
#> | github/growthestimate | github/grpslopemc |
#> | github/grridgecodata | github/gsa4mirna |
#> | github/gsalightning | github/gsbc |
#> | github/gsca | github/gsea-incontext |
#> | github/gsia | github/gsimp |
#> | github/gsl | github/gsmodutils |
#> | github/gsp | github/gsso |
#> | github/gsu | github/gtc |
#> | github/gtdbtk | github/gtm-generativetopographicmapping |
#> | github/gtotree | github/gtrac |
#> | github/gtshark | github/gtz |
#> | github/gubbins | github/guoweifeng |
#> | github/guv-ap | github/gwa-tutorial |
#> | github/gwalpha | github/gwas-scripts |
#> | github/gwasrapidd | github/gwc |
#> | github/gxbrowser | github/h-blast |
#> | github/h-popg | github/hal |
#> | github/halc | github/hammock |
#> | github/haoran2014 | github/haploclique |
#> | github/haploconduct | github/haploforge |
#> | github/haplomerger2 | github/hapmc |
#> | github/hapmuc | github/happe |
#> | github/happytools | github/harc |
#> | github/harmony | github/harvest |
#> | github/hasappy | github/hasn |
#> | github/hatspil | github/haveyouswappedyoursamples |
#> | github/hayai-annotation-plants | github/haystack-bio |
#> | github/hbm | github/hcsa |
#> | github/hdx-viewer | github/heap |
#> | github/hedicim | github/hefpipe-rpos |
#> | github/helmsman | github/helo |
#> | github/hemodonacion | github/herg-chembl-jcim |
#> | github/hergepred | github/heritability |
#> | github/hetero-rp | github/heteroplasmyworkflow |
#> | github/hfufs | github/hg-color |
#> | github/hgtector | github/hgtsim |
#> | github/hgvs | github/hh-suite |
#> | github/hhcompare | github/hhconpred |
#> | github/hic-pro | github/hic-spector |
#> | github/hicap | github/hicaptools |
#> | github/hiceekr | github/hicgan |
#> | github/hiclipr | github/hicnvtranslocation |
#> | github/hicomet | github/hicplotter |
#> | github/hictranshi-c | github/hierarchical-hotnet |
#> | github/hierarchical-rnns-model-for-ddi-extraction | github/hierarchical3dgenome |
#> | github/hifresp | github/high-quality-ellipse-detection |
#> | github/hihmm | github/hima |
#> | github/himc | github/hintra |
#> | github/hippodeep | github/hipred |
#> | github/hirgc | github/historian |
#> | github/hitime | github/hitselect |
#> | github/hitwalker2 | github/hiv-gag-immunogens |
#> | github/hivmmer | github/hla-bind |
#> | github/hla-la | github/hlama |
#> | github/hlaprofiler | github/hlatyphon |
#> | github/hlmethy | github/hmc-grt |
#> | github/hmeta-d | github/hmm-based-method |
#> | github/hmmerctter | github/hmmpe |
#> | github/hmtgo | github/hnematzadeh |
#> | github/hnmdrp | github/hnmf |
#> | github/hocnnlb | github/hodgkin-huxley-spde |
#> | github/hogmmnc | github/hollytibble |
#> | github/homblocks | github/home |
#> | github/hopland | github/hops |
#> | github/horvathlab-ngs | github/hot-scan |
#> | github/hotspot | github/howdesbt |
#> | github/hpc-workflow-manager | github/hpccs |
#> | github/hpg-aligner | github/hpg-pore |
#> | github/hpo2go | github/hppi-tensorflow |
#> | github/hpviewer | github/hr1912/treeexp |
#> | github/hsa | github/hsesumo |
#> | github/htdp | github/hts-barcode-checker |
#> | github/hts-nim | github/hts-nim-tools |
#> | github/htsint | github/htssip |
#> | github/htsvis | github/hulk |
#> | github/hupan | github/hurdlenormal |
#> | github/hvisaclassifier | github/hvsm |
#> | github/hyasp | github/hyb |
#> | github/hybphylomaker | github/hybpiper |
#> | github/hybriddetective | github/hyde |
#> | github/hydra | github/hyper |
#> | github/hyper-docs | github/hypercubeme |
#> | github/hypergate | github/hypergraphdynamiccorrelation |
#> | github/hypocotyl-unet | github/hyppo |
#> | github/hysxe/acme | github/ia-lab |
#> | github/iamcomparison | github/iatc-nrakel |
#> | github/ibiomes | github/ibpp |
#> | github/ibrel | github/icb-docker |
#> | github/icepop | github/ichseg |
#> | github/icma | github/icn3d |
#> | github/icnv | github/icopydav |
#> | github/icr142-benchmarker | github/ideepe |
#> | github/ideeps | github/identification-of-brain-based-disorders |
#> | github/identificationwitharme | github/idepi |
#> | github/idhi-mirw | github/idingo |
#> | github/idlp | github/idssr |
#> | github/if | github/ifeature |
#> | github/iform | github/igb-mi-bundle |
#> | github/igess | github/igloo |
#> | github/iguide | github/iham |
#> | github/iht.jl | github/ikap |
#> | github/illumina-utils | github/image-engine |
#> | github/image-quality-evaluation | github/imagebasedtranscriptomics |
#> | github/imagebox | github/imagecn |
#> | github/imagepy | github/imaging-of-drugs-distribution-and-quantifications |
#> | github/imap | github/imapsplice |
#> | github/imcmda | github/imglib |
#> | github/imgui-electron-packages | github/immboost |
#> | github/immclass2019 | github/immucc |
#> | github/immune-deconvolution-benchmark | github/immunedb |
#> | github/immunedeconv | github/impact |
#> | github/imperfect-gold-standard | github/impre |
#> | github/improver2013 | github/imputation |
#> | github/ims-informed-library | github/ims-project |
#> | github/ims-quality | github/imsa-a |
#> | github/imspectr | github/imtrbm |
#> | github/indecut | github/index |
#> | github/index-app-public | github/indra-pathway-map |
#> | github/infinity | github/infiniumpurify |
#> | github/infmod3dgen | github/inform |
#> | github/inmembrane | github/inmf |
#> | github/innate2adaptive/decombinator | github/inpactor |
#> | github/insilico-subtyping | github/insilicoseq |
#> | github/inspiired | github/intarna |
#> | github/integrate | github/integrate-neo |
#> | github/integrate-vis | github/integratedphasing |
#> | github/integrative | github/integrativeanalysis |
#> | github/integreat | github/interactiverosetta |
#> | github/interface-classifier | github/interminer |
#> | github/intlim | github/invertinggan |
#> | github/ionmf | github/ionspattern |
#> | github/ipa | github/ipbt |
#> | github/ipct | github/iphloc-es |
#> | github/ipo | github/ipsa |
#> | github/irap | github/irecspot |
#> | github/irscope | github/irspot-sf |
#> | github/is-cellr | github/isa-tools |
#> | github/isc | github/iscore |
#> | github/isdb | github/iseeu |
#> | github/isescan | github/isglobal-brge/lambda |
#> | github/isgpt | github/ishidalab-titech/3dcnn-mqa |
#> | github/ishspsy-project | github/iskana/pbwt-sec |
#> | github/islandpath | github/ismags |
#> | github/ismb15 | github/ismb2017-lstm |
#> | github/iso2flux | github/isocket |
#> | github/isocor | github/isoem2 |
#> | github/isofishr | github/isomir2function |
#> | github/isop | github/isoscm |
#> | github/isosegmenter | github/isotope-correction-toolbox |
#> | github/isotopiclabelling | github/isotree |
#> | github/isown | github/ispp |
#> | github/issues | github/iswathx |
#> | github/iterassemble | github/iterativeerrorcorrection |
#> | github/ivc | github/ivis |
#> | github/ivus-ultrasonic | github/iwgs |
#> | github/jackhou2/c3 | github/jaffa |
#> | github/jama16-retina-replication | github/james-e-barrett |
#> | github/jami | github/jamss |
#> | github/jannovar | github/janus |
#> | github/japsa | github/jarvis |
#> | github/jaxbd2k-shortcourse | github/jbcb2018 |
#> | github/jbudis/lambda | github/jcvi |
#> | github/jdinac | github/jepegmix2 |
#> | github/jesse | github/jester |
#> | github/jinchaofeng-code | github/jingwyang/treeexp |
#> | github/jiyuanhu | github/jms |
#> | github/jmztab-m | github/joa |
#> | github/johnbarton/ace | github/joint-marker-free-alignment |
#> | github/jointrn | github/joker |
#> | github/jomayer/smurf | github/jrgui |
#> | github/jsms | github/juchmme |
#> | github/juliapalacios/phylodyn | github/justorthologs |
#> | github/juzhe1120-matlab-software | github/jvarkit |
#> | github/kablammo | github/kalign |
#> | github/kanizsa-prime | github/kaptive |
#> | github/kaptive-web | github/kart |
#> | github/kasimcloud | github/kasimjs |
#> | github/kat | github/kbet |
#> | github/kbmtl | github/kbranches |
#> | github/kbws | github/kcmbt-mt |
#> | github/kdetrees | github/kdsnp |
#> | github/keanu | github/kekulescope |
#> | github/kema | github/kent |
#> | github/keratocyte | github/kernelized-rank-learning |
#> | github/kescases | github/kestrel |
#> | github/keyregulatorygenes | github/kf-arabidopsis-grna |
#> | github/kfits | github/kgs |
#> | github/kinact | github/kinconform |
#> | github/kinmut2 | github/kinship-privacy |
#> | github/kipper | github/kirp-topological-features |
#> | github/kltepigenome | github/km2gcn |
#> | github/kmcex | github/kmer-db |
#> | github/kmer-ssr | github/kmerind |
#> | github/kmerpyramid | github/kneeanalysis |
#> | github/knn | github/knot-pull |
#> | github/knoto-id | github/knotty |
#> | github/knowledge-elicitation-for-precision-medicine | github/knowledgediscovery |
#> | github/kodicollins/pasta | github/kollector |
#> | github/kover | github/kpal |
#> | github/kpax3.jl | github/kpic2 |
#> | github/kpm | github/krab-znf |
#> | github/krait | github/kraken |
#> | github/krakenuniq | github/kreationsupplementary |
#> | github/krm15/acme | github/kronos |
#> | github/ksea | github/ksp-puel |
#> | github/ksrepo | github/kubenow-plugin |
#> | github/kubernetes/charts | github/kurtosis-conservation |
#> | github/kusterlab | github/kwip |
#> | github/kyzhu/assembltrie | github/l0adridge |
#> | github/l1em | github/la-isla-de-tomato |
#> | github/lacroixlaurent | github/lacytools |
#> | github/laggedorderedlassonetwork | github/lambda |
#> | github/lamoureux-lab/3dcnn-mqa | github/lamsa |
#> | github/lancet | github/largegopred |
#> | github/larvalign | github/lasagne4bio |
#> | github/lattice-metage | github/laura-orellana/ebdims |
#> | github/lb-impute | github/lbeep |
#> | github/lc-ms-pachyderm | github/lc50 |
#> | github/lca-cnn | github/lcslcis |
#> | github/lcv | github/ld |
#> | github/ldjump | github/ldserv |
#> | github/leaf | github/leaf-gp |
#> | github/leap | github/learningdl |
#> | github/ledpred | github/lem |
#> | github/lemon | github/lemon-tree |
#> | github/lenup | github/lep |
#> | github/lfc | github/lgcm |
#> | github/lhqxinghun-bioinformatics | github/lhqxinghun/bioinformatics |
#> | github/libchebi | github/libcsam |
#> | github/libgaba | github/libgtftk |
#> | github/libra-x | github/librfn |
#> | github/libstructural | github/lifs-tools |
#> | github/lightassembler | github/lightdock |
#> | github/lightdock-bm5 | github/likelihoodfreephylogenetics |
#> | github/lilikoi | github/limbr |
#> | github/limitfluxtocore | github/limix |
#> | github/lims | github/lincs-rnaseq-cpp |
#> | github/linearfold | github/linker |
#> | github/linkhd | github/lionessr |
#> | github/lipase-reclassification | github/lipidfinder |
#> | github/lipidminion | github/liquid |
#> | github/lir | github/lis-context-viewer |
#> | github/litemol | github/lll-fva |
#> | github/lm-lstm-crf | github/lme4qtl |
#> | github/lmmel-mir-miner | github/lmmo |
#> | github/lncadeep | github/lncdiff |
#> | github/lncmirsrn | github/lncrna-disease-link |
#> | github/lncrna-homologs | github/lncrna-id |
#> | github/lncscore | github/lobstahs |
#> | github/localtadsim | github/locings |
#> | github/locnuclei | github/locusexplorer |
#> | github/locustreeinference | github/logical-modelling-pipeline |
#> | github/logloss-beraf | github/lollipops |
#> | github/lolopicker | github/longitudinal-microbiome-analysis-public |
#> | github/longo | github/look4trs |
#> | github/lordfast | github/loregic |
#> | github/lorisnanni | github/lpg |
#> | github/lrcstats | github/lrdkt |
#> | github/lrf-dtis | github/lrsim |
#> | github/lrssl | github/lsdbs-mpi |
#> | github/lsgkm | github/lsm-worker |
#> | github/lsmm | github/lstd |
#> | github/lstmvoter | github/lstrap-lite |
#> | github/lsue | github/ltmgsca |
#> | github/ltr-retriever | github/lumpy-sv |
#> | github/lvq-knn | github/lw-fqzip2 |
#> | github/lwlrtest | github/lyve-set |
#> | github/lzerospikeinference | github/lzw-kernel |
#> | github/m2align | github/m2c |
#> | github/m2c-rel-nb | github/m3drop |
#> | github/ma-compbio/multires | github/macarthur-lab/clinvar |
#> | github/macau | github/mackinac |
#> | github/macs | github/macsyfinder |
#> | github/mad-hype | github/magellan |
#> | github/magetbrain | github/magi |
#> | github/magi-s | github/magic |
#> | github/magpy | github/magus |
#> | github/maize-tes | github/maize-tissue-specific-grn |
#> | github/maizedig | github/maizesnpdb |
#> | github/maizete-variation | github/malax |
#> | github/maligner | github/malini |
#> | github/manga | github/manta |
#> | github/manuscript-avsec-bioinformatics-2017 | github/map3k8-thyroid-spheres-v-3.0 |
#> | github/mapcomp | github/mapexr |
#> | github/mapoptics | github/mappi-dat |
#> | github/maprepeat | github/maps |
#> | github/mapseq | github/maracluster |
#> | github/marathon | github/mark2curedata |
#> | github/marker2sequence | github/markyt |
#> | github/marsi | github/marvel |
#> | github/marvin | github/masashitsubaki |
#> | github/mascot | github/mash |
#> | github/mashmap | github/mason |
#> | github/mass | github/mass-simulator |
#> | github/masscomp | github/massif |
#> | github/massytools | github/mast |
#> | github/mastermsm | github/matam |
#> | github/matataki | github/matched-forest |
#> | github/mathbiocu | github/mathelab/ramp-db |
#> | github/matrixconverter | github/matrixepistasis |
#> | github/matryoshka | github/matscholar |
#> | github/maxent-ppi | github/mayonlppapcdss |
#> | github/mbeccuti/pgs | github/mbirw |
#> | github/mc-cbn | github/mcclintock |
#> | github/mccortex | github/mcee-2.0 |
#> | github/mcimpute-scrnaseq | github/mcindoor20000 |
#> | github/mcmc-ce-codes | github/mcorr |
#> | github/mcs | github/mcsc-decontamination |
#> | github/mcsmrt | github/mct |
#> | github/mctandem | github/mctcodes |
#> | github/mctl | github/mcts-rna |
#> | github/md-task | github/mda-cnn |
#> | github/mdine | github/mdkarcher/phylodyn |
#> | github/mdnnmd | github/mdpbiome |
#> | github/mdplot | github/mds2 |
#> | github/mdts | github/mea |
#> | github/mea-tools | github/means |
#> | github/mec | github/mecat |
#> | github/mecors | github/med4way |
#> | github/medcrawler | github/medestrand |
#> | github/medication-qa-medinfo2019 | github/medici |
#> | github/medline-code-v2 | github/medline-collaboration-datasets |
#> | github/medtest | github/medusa |
#> | github/meffil | github/mefit |
#> | github/mega | github/megagta |
#> | github/megan-ce | github/meltos |
#> | github/memo | github/mendelian |
#> | github/mendelprob | github/mentalist |
#> | github/mepurity | github/mer |
#> | github/meristogram | github/merlot |
#> | github/meshsim | github/meta-gdbp |
#> | github/meta-proteome-analyzer | github/metaassemblyeval |
#> | github/metabmf | github/metaboanalystr |
#> | github/metabocraft | github/metabodiff |
#> | github/metabolicframework | github/metabolomics-filtering |
#> | github/metabolomicstools | github/metabridge-shiny |
#> | github/metacache | github/metacherchant |
#> | github/metachip | github/metacluster |
#> | github/metacomp | github/metacrast |
#> | github/metacrispr | github/metacycle |
#> | github/metadiff | github/metaerg |
#> | github/metafast | github/metagen |
#> | github/metagenome-pfam-score | github/metagenomic-benchmark |
#> | github/metago | github/metagrn |
#> | github/metakallisto | github/metalab |
#> | github/metamos | github/metamsd |
#> | github/metaomics | github/metapalette |
#> | github/metapathways2 | github/metapheno |
#> | github/metaphinder | github/metaplotr |
#> | github/metapoap | github/metapred2cs |
#> | github/metaqubic | github/metarep |
#> | github/metaseek | github/metashot |
#> | github/metasmc | github/metaspark |
#> | github/metasra-pipeline | github/metatopics |
#> | github/metawrap | github/metaxcan |
#> | github/metcirc | github/metdiff |
#> | github/metgem | github/methcomp |
#> | github/methrafo | github/methylcode |
#> | github/methylflow | github/methyliftover |
#> | github/methylimp | github/methylmaps |
#> | github/metica | github/metitree |
#> | github/metlab | github/metpeak |
#> | github/metquest | github/metqy |
#> | github/metriculator | github/metumpx-bin |
#> | github/mexcowalk | github/mfeprimer |
#> | github/mfmd | github/mfsba |
#> | github/mgicnn | github/mgpfusion |
#> | github/mgrfe-garfe | github/mhc-typer |
#> | github/mhfp | github/mhn |
#> | github/mhtrajectoryr | github/miams |
#> | github/mic-meme | github/micado |
#> | github/micmic | github/micop |
#> | github/micro | github/microaggregation-based-anonymization-tool |
#> | github/microbe-id | github/microbedb |
#> | github/microbial-conditions-ontology | github/microbiome-fixed-reference |
#> | github/microbiome-helper | github/microbiome-v2.1 |
#> | github/microbiomedda | github/microbiomegwas |
#> | github/microbiota-resistome | github/micropro |
#> | github/microrna-nhpred | github/microscope |
#> | github/mid-correct | github/miergolf |
#> | github/miic | github/mills-lab/vapor |
#> | github/mim | github/mimeanto |
#> | github/mimi | github/mina |
#> | github/mind | github/mines |
#> | github/miniasm | github/minicom |
#> | github/minimap | github/minimap2 |
#> | github/minimds | github/minimizers |
#> | github/minion-qc | github/mintmap |
#> | github/mio | github/mionsite |
#> | github/mipepid | github/miphy |
#> | github/mipup | github/mir-prefer |
#> | github/mira | github/miraimplications |
#> | github/mirfinder | github/mirfix |
#> | github/mirge | github/mirgff3 |
#> | github/mirlocator | github/mirmark |
#> | github/mirmeta | github/mirmmr |
#> | github/mirseqviewer | github/mirtardann |
#> | github/mirtime | github/mirtop |
#> | github/mirtrace | github/mirureader |
#> | github/mirvial | github/miscoto |
#> | github/misfinder | github/miso-example |
#> | github/mispu | github/mistic |
#> | github/mitefinder | github/mitobim |
#> | github/mitodix | github/mitoimp |
#> | github/mitophast | github/mitoseek |
#> | github/mitoz | github/mitre |
#> | github/mix | github/mixclone |
#> | github/mixed-effect-gams | github/mixedperfectphylogeny |
#> | github/mixmir | github/mixmpln |
#> | github/mixsubhap | github/mlrmbo |
#> | github/mlsf | github/mlstar |
#> | github/mltm | github/mmcnn |
#> | github/mme-apis | github/mmpdb |
#> | github/mmr | github/mmseq |
#> | github/mmseqs | github/mmtf-javascript |
#> | github/mmvec | github/mnem |
#> | github/moabb | github/mob-suite |
#> | github/mobiusklein | github/mocaprecovery |
#> | github/moccasin | github/moccs |
#> | github/mod-bio | github/mode-task |
#> | github/model-discovery-tool | github/model-fitting-cbs |
#> | github/modelexplorer | github/modeltest |
#> | github/modentify | github/modict |
#> | github/modistools | github/modmaps3d |
#> | github/modsara2 | github/moff |
#> | github/molecular-clock | github/molgenis-imputation |
#> | github/molgenis/molgenis | github/moli |
#> | github/moloc | github/molti |
#> | github/molti-dream | github/molyso |
#> | github/momi-g | github/monster |
#> | github/montra | github/moomin |
#> | github/morfpred-plus | github/morph-bulk |
#> | github/morpholex-en | github/mosbat |
#> | github/mosdepth | github/motif-scraper |
#> | github/motifbreakr | github/motion-detection |
#> | github/mountainclimber | github/mousetrap-os |
#> | github/mp | github/mp-lamp |
#> | github/mpicbg-scicomp/snakemake-workflows | github/mpies |
#> | github/mplnclust | github/mpradesigntools |
#> | github/mprascore | github/mptm |
#> | github/mptp | github/mqap |
#> | github/mqc | github/mr-demuxy |
#> | github/mrbait | github/mrcnn-scene-recognition |
#> | github/mrgbp | github/mrgsea |
#> | github/mrlr | github/mrrad |
#> | github/ms-data-core-api | github/ms-empire |
#> | github/ms-lda | github/ms2gs |
#> | github/ms2ldaviz | github/msc-tree-resampling |
#> | github/msf | github/msisensor |
#> | github/msmexplorer | github/mspac |
#> | github/msparsm | github/mspire |
#> | github/msproteomicstools | github/msqrob |
#> | github/msr | github/msreduce |
#> | github/mst-minor-allele-caller | github/mswaldhmp |
#> | github/mtb-report | github/mtb-sig-miner |
#> | github/mtbgt | github/mtbnn |
#> | github/mtbseq-source | github/mtgipick |
#> | github/mtgosc | github/mtipatchsearch |
#> | github/mtmr-net | github/mucor |
#> | github/mulrfrepo | github/multi-csar |
#> | github/multiclass-segmentation | github/multigems |
#> | github/multiguidescan | github/multimed |
#> | github/multimodal-brain-synthesis | github/multimodal-medical-image-synthesis |
#> | github/multimodal-network-diffusion | github/multimodalprognosis |
#> | github/multiphate | github/multiplierz |
#> | github/multitable-review | github/multivarnetwork |
#> | github/multiwayclassification | github/multiwayregression |
#> | github/musica | github/musitedeep |
#> | github/mutationtcn | github/mutscan |
#> | github/muxstep | github/mvbc |
#> | github/mvlr | github/mvp-aaa-codelabs |
#> | github/mwas-biomarkers | github/mwfft2 |
#> | github/mxfold | github/mychembl |
#> | github/mycofier | github/mycorrhiza |
#> | github/myelinj | github/myelinq |
#> | github/mynclist | github/mypmfs |
#> | github/mytai | github/mz.unity |
#> | github/n1pas | github/nacho |
#> | github/naf | github/nanatex |
#> | github/nandb | github/nanocall |
#> | github/nanodj | github/nanomark |
#> | github/nanook | github/nanopack |
#> | github/nanopype | github/nanor |
#> | github/napeasy | github/narx-qoe-release |
#> | github/nb-distribution | github/nbfpeg |
#> | github/nblda | github/nbss |
#> | github/nbzimm | github/ncappc |
#> | github/ncbi-hackathons | github/ncddetect2 |
#> | github/ncgocr | github/nclaes/coral |
#> | github/nclcomparator | github/ncphlda |
#> | github/ncyc | github/ndd |
#> | github/ndexr | github/neat |
#> | github/neat-genreads | github/neatfreq |
#> | github/neep | github/negationdistribution |
#> | github/negbio | github/nemo |
#> | github/neo-pep-tool | github/neodti |
#> | github/neoepitope | github/neopredpipe |
#> | github/nephele | github/neptune |
#> | github/nessie | github/nest |
#> | github/nested-sampling | github/nestly |
#> | github/netgem | github/nethypgeom |
#> | github/netics | github/netminer |
#> | github/netml | github/netpathminer |
#> | github/netprophet-2.0 | github/netprot |
#> | github/netsmooth | github/network-classifier |
#> | github/network-snps | github/networkannotation |
#> | github/networkinference | github/networkregularisedcox |
#> | github/networkrobustnesstoolbox | github/neubi |
#> | github/neural-circuits-vr | github/neuroinformatics |
#> | github/neuromatic | github/neuromeasure |
#> | github/neuromorphovis | github/neuroner |
#> | github/newton-method-mds | github/nextclip |
#> | github/nextflu | github/nextpolish |
#> | github/nextstrain | github/nexus |
#> | github/ngl | github/nglview |
#> | github/ngly | github/ngmaster |
#> | github/ngmerge | github/ngmlr |
#> | github/ngo2019-authortopic | github/ngrhmda |
#> | github/ngs-bits | github/ngs-pipe |
#> | github/ngs-qcbox | github/ngsane |
#> | github/ngscheckmate | github/ngscloud |
#> | github/ngsf-hmm | github/ngsld |
#> | github/ngspanpipe | github/ngsphy |
#> | github/ngsplusplus | github/ngsrelate |
#> | github/ngstools | github/ngtas-pipeline |
#> | github/nicebot | github/nichesimulation |
#> | github/nifpred | github/niftylink |
#> | github/nimbus | github/nimfa |
#> | github/nipter | github/nitpicker |
#> | github/nitrilase | github/nitrogenuptake2016 |
#> | github/nitumid | github/njmerge |
#> | github/nldmseq | github/nlpar |
#> | github/nmfem | github/nmflibrary |
#> | github/nmrlipids | github/nnlda |
#> | github/node.dating | github/noisecancellingrepeatfinder |
#> | github/nojah | github/non-parametric-algorithm-to-isolate-chunks-in-response-sequences |
#> | github/nonlineargradientsui | github/nonparametricsummarypsm |
#> | github/nonpareil | github/novo-stitch |
#> | github/novocaller | github/novoplasty |
#> | github/npa | github/npd-micro-saccade-detection |
#> | github/nplb | github/npnn |
#> | github/npreader | github/npyc-toolbox |
#> | github/npyc-toolbox-tutorials | github/nquire |
#> | github/nrc | github/nrl2drp |
#> | github/nrlmfb | github/nrps-linker |
#> | github/nsclc-subtype-classification | github/nseq |
#> | github/nsg | github/nss-of-lwir-and-vissible-images |
#> | github/nssrfbinary | github/nssrfpackage |
#> | github/ntcard | github/ntedit |
#> | github/ntp-ersn | github/nucdiff |
#> | github/nuclei-segmentation | github/nucleosee |
#> | github/nuclitrack | github/nurse |
#> | github/nvenn | github/nvr |
#> | github/nvt | github/nx4 |
#> | github/nxtrim | github/nyiuab/bhglm |
#> | github/obcs | github/oclust |
#> | github/oddt | github/ode-rmhmc |
#> | github/odin | github/odonata-traits |
#> | github/oefinder | github/off-target-prediction |
#> | github/off-target-prediction | github/officechromatography |
#> | github/offsetbasedgraph | github/offtargetpredict |
#> | github/og-consistency-pipeline | github/ogcleaner |
#> | github/ogfsc | github/ogt-prediction |
#> | github/ohana | github/ohvarfinder |
#> | github/olga | github/ols-client |
#> | github/ols-dialog | github/omaat |
#> | github/omblast | github/omgraph |
#> | github/omhismb2019 | github/omic-features-successful-targets |
#> | github/omicpred | github/omicsintegrator |
#> | github/oncosimul | github/oncotator |
#> | github/online-chem | github/onto2graph |
#> | github/onto2vec | github/ontologies |
#> | github/ontologyeval | github/ontologyevaluate |
#> | github/ontomaton | github/ontoquery |
#> | github/opa2vec | github/opal |
#> | github/opal-plus | github/openbehavior |
#> | github/opencapsule | github/openfmrianalysis |
#> | github/openhealth | github/openms |
#> | github/opennft-demo | github/opentree |
#> | github/optical | github/optimal-seed-solver |
#> | github/optimir | github/optimize-it |
#> | github/optimum-rlda | github/optnetaligncpp |
#> | github/optpipe | github/orbkit |
#> | github/orbslamm | github/orca |
#> | github/orcacode | github/orchid |
#> | github/orderedpainting | github/ordino |
#> | github/orfm | github/organelle-pba |
#> | github/organsegrstn | github/orna |
#> | github/orthofinder | github/orthopara-constraintchecker |
#> | github/orthoscope | github/osdb |
#> | github/osfp | github/osprey-refactor |
#> | github/ost-pymodules | github/outcome-prediction-nse |
#> | github/outlier-in-blast-hits | github/ovarcall |
#> | github/overlap | github/oxsa |
#> | github/oyster-river-protocol | github/p2rank |
#> | github/p5-bpwrapper | github/paamia2015 |
#> | github/pacemaker-clustering-methods | github/pachyderm/pachyderm |
#> | github/pacificbiosciences/falcon | github/package-gfe |
#> | github/pacl | github/pacom |
#> | github/pact | github/pad |
#> | github/padimi | github/paga |
#> | github/pagal | github/paladin |
#> | github/pals | github/pam |
#> | github/pames | github/pamir |
#> | github/pandelos | github/panfp |
#> | github/pangenome | github/pangenomepipeline |
#> | github/panget | github/panisa |
#> | github/panoptes | github/pantools |
#> | github/panviz | github/papago |
#> | github/papst | github/para-dpmm |
#> | github/para-suite | github/para-suite-aligner |
#> | github/paragsea | github/parapred |
#> | github/parasail | github/parasor |
#> | github/parastagonospora-nodorum-sn15 | github/parentage |
#> | github/parfit | github/pargenes |
#> | github/parkour | github/parsnip |
#> | github/partie | github/parties |
#> | github/partitionfinder | github/partitionuce |
#> | github/pascal | github/pasdqc |
#> | github/pasnet | github/pass |
#> | github/pastas | github/pastaspark |
#> | github/patchdca | github/path2surv |
#> | github/pathdeseq | github/pathemb |
#> | github/pathogenportal | github/pathos |
#> | github/pathrings | github/pathscore |
#> | github/pathway-mapper | github/pathwaymatcher |
#> | github/pathwaymatrix | github/patientexplorer |
#> | github/pats | github/patterncnv |
#> | github/pattrec | github/pavian |
#> | github/pavooc | github/pbrowse |
#> | github/pbtest-r-package | github/pbxplore |
#> | github/pcasa | github/pcdslab |
#> | github/pcetk | github/pcgr |
#> | github/pclean-release | github/pcmf |
#> | github/pcnem | github/pconsc4 |
#> | github/pcr-error-correction | github/pcrduplicates |
#> | github/pctpred | github/pdb-tools |
#> | github/pdb2entropy | github/pdb2trent |
#> | github/pdeep | github/pdhs-elm |
#> | github/pdhs-svm | github/pdna |
#> | github/pdv | github/pdx-analysis-workflows |
#> | github/pea | github/pea-m5c |
#> | github/peak-grouping-alignment | github/peakc |
#> | github/peakerror | github/peakplotter |
#> | github/peakxus | github/peakzilla |
#> | github/peath | github/ped |
#> | github/pedigreenet | github/pedla |
#> | github/pegasus | github/pehaplo |
#> | github/peitho | github/penndiff |
#> | github/pep | github/pepfoot |
#> | github/pepkalc | github/pepr |
#> | github/pepvis | github/pepx |
#> | github/perf | github/perfect |
#> | github/perga | github/perpetually-updated-trees |
#> | github/personalized-regression | github/pets |
#> | github/pez | github/pfam-map-loader |
#> | github/pfam-maps | github/pfinderuce-swsc-en |
#> | github/pga | github/pgen-genomicvariations-workflow |
#> | github/pgrnafinder | github/phage |
#> | github/phandango | github/phanotate |
#> | github/pharmaconer | github/phat |
#> | github/phelim | github/pheno4j |
#> | github/phenogocon | github/phenomenet-vp |
#> | github/phenomescape | github/phenominer |
#> | github/phenopolis | github/phenorank |
#> | github/phenos | github/phenotype-prediction-pipeline |
#> | github/phenotypeseeker | github/phenotypesimulator |
#> | github/phesant | github/phewas |
#> | github/phnmnl | github/phocos |
#> | github/phoglystruct | github/phosphoproteome-prediction |
#> | github/phraider | github/phy-mer |
#> | github/phyc | github/phyclip |
#> | github/phyd3 | github/phydelity |
#> | github/phyfoo | github/phyinformr |
#> | github/phylesystem | github/phylesystem-api |
#> | github/phylip-enhance | github/phylo-io |
#> | github/phylo-node | github/phyloctcflooping |
#> | github/phylogeotool | github/phyloligo |
#> | github/phylomad | github/phylomagnet |
#> | github/phylonetworks.jl | github/phylopi |
#> | github/phyloprofile | github/phylorad |
#> | github/phyloscanner | github/phylostratr |
#> | github/phylosub | github/phylowgs |
#> | github/phyml | github/physca |
#> | github/physiboss | github/phytoassembly |
#> | github/phyx | github/pi2 |
#> | github/pia | github/piblup |
#> | github/picalculax | github/picky |
#> | github/pidgin | github/piil |
#> | github/pileup.js | github/pimms |
#> | github/pimp | github/pinda |
#> | github/pinetree | github/pingpongpro |
#> | github/pipeline-for-isoseq | github/pipeliner |
#> | github/pipred | github/pirnapredictor |
#> | github/pirnn | github/pirsupplementary |
#> | github/pisces | github/pixel |
#> | github/pixie | github/plaac |
#> | github/plaidoh | github/planteome |
#> | github/plasmidseeker | github/plasmidtron |
#> | github/pldist | github/plier |
#> | github/pll-modules | github/ploidyinfer |
#> | github/ploidyngs | github/pluto |
#> | github/pmanalyzer | github/pmanalyzerweb |
#> | github/pmd | github/pmfa |
#> | github/pmsignature | github/pnc |
#> | github/pnerf | github/pnnl |
#> | github/poap | github/pocketpipe |
#> | github/polster | github/polya-prediction-lrm-dnn |
#> | github/polyainv | github/polyclustr |
#> | github/polydfe | github/polyploid-genotyping |
#> | github/polyqtl | github/pong |
#> | github/popcluster | github/popdemog |
#> | github/popfba | github/pophelper |
#> | github/popins | github/poplddecay |
#> | github/popstr | github/poptrt |
#> | github/posdatools | github/pose |
#> | github/pose-regularization | github/posigene |
#> | github/positionalmi | github/positive-selection |
#> | github/postplsr | github/pourrna |
#> | github/powerfit | github/powsimr |
#> | github/ppa-assembler | github/ppi |
#> | github/ppis-wdsvm | github/ppnid |
#> | github/ppr-meta | github/ppsp |
#> | github/pqhe | github/praline |
#> | github/prankwebapp | github/precise |
#> | github/predcrp | github/predgly |
#> | github/predictability-of-cancer-evolution | github/prediction-prostate-surveillance |
#> | github/predixcan | github/predpsi-svr |
#> | github/predrad | github/prefersim |
#> | github/prefmd | github/prequal |
#> | github/presm | github/presogenesis |
#> | github/price | github/pride-toolsuite |
#> | github/primer3 | github/primer3-masker |
#> | github/princces | github/prince |
#> | github/princess-opensource | github/priorknowledgeepistasisrank |
#> | github/prism | github/probabilitymapviewer |
#> | github/probannopy | github/probhap |
#> | github/procell | github/prodigy |
#> | github/profet | github/progressivecactus |
#> | github/promodule | github/promotepredictor |
#> | github/promoterpredict | github/proper-extension |
#> | github/propip | github/proq-scripts |
#> | github/prosampler | github/prosave |
#> | github/prosstt | github/protaeljs |
#> | github/protasr | github/protein-folding-decoy-set |
#> | github/protein-ml | github/protein-recon-mcriemman |
#> | github/protein-sequence-analysis | github/protein-solubility |
#> | github/protein2genetree | github/proteinpocketdetection |
#> | github/proteoformer | github/proteomicsbrowser |
#> | github/proteomodlr | github/proteosign |
#> | github/protspam | github/prottrace |
#> | github/proxdist | github/proxl-web-app |
#> | github/psbvb | github/pseaac-psepssm-wd |
#> | github/psearch | github/psepssm-dcca-lfda |
#> | github/psi | github/psi-blastexb |
#> | github/psi-sigma | github/psims |
#> | github/psite | github/psiz |
#> | github/psmvc | github/psucce |
#> | github/psynteract | github/ptempest |
#> | github/ptm-x | github/ptmapper |
#> | github/ptolemy | github/ptuneos |
#> | github/ptw | github/ptxqc |
#> | github/pubmedportable | github/pufferfish |
#> | github/puffin | github/pulmon |
#> | github/pulp | github/pulser |
#> | github/pupil-size | github/pureclip |
#> | github/pvac-seq | github/pvalue-weighting-matlab |
#> | github/pviz | github/pwc-net |
#> | github/pwrewas | github/pwtees |
#> | github/pyabc | github/pyar |
#> | github/pyaudioanalysis | github/pyboolnet |
#> | github/pycellerator | github/pycgm |
#> | github/pycgtool | github/pychemia |
#> | github/pychimera | github/pycotools |
#> | github/pydca | github/pydream |
#> | github/pyefp | github/pyfeat |
#> | github/pygenprop | github/pygtftk |
#> | github/pyham | github/pyhla |
#> | github/pyhsiclasso | github/pykeen |
#> | github/pyloh | github/pymbar |
#> | github/pymcpsc | github/pymethylprocess |
#> | github/pymod | github/pymzml |
#> | github/pynbs | github/pyncs |
#> | github/pypanda | github/pypdb |
#> | github/pypedia | github/pypedia-server |
#> | github/pyphi | github/pypore |
#> | github/pyro-nn | github/pyrod |
#> | github/pyscestoolbox | github/pyseer |
#> | github/pysfd | github/pysm |
#> | github/pysradb | github/pysster |
#> | github/pytag | github/pytanfinder |
#> | github/pytc | github/pyvolve |
#> | github/pywater | github/pywindow |
#> | github/q2-feature-classifier | github/q2-fragment-insertion |
#> | github/q2-longitudinal | github/q2mm |
#> | github/qanalysis-project | github/qbioimages |
#> | github/qc-dmet | github/qc3 |
#> | github/qiaseq-dna | github/qmlgalaxyportal |
#> | github/qpa | github/qparse |
#> | github/qpath | github/qreadselector |
#> | github/qs-net | github/qsimscan |
#> | github/qsmooth | github/qsubsec |
#> | github/qtc | github/quadmutex |
#> | github/quagmir | github/quandico |
#> | github/quantifly | github/quantilebootstrap |
#> | github/quantinemo | github/quantnorm |
#> | github/quartetscores | github/quasar |
#> | github/qubic2 | github/quentin |
#> | github/queries | github/querymed |
#> | github/questionnaire | github/quimp |
#> | github/quin | github/quota-alignment |
#> | github/qvz | github/r-samstrt |
#> | github/r.sambada | github/r2dgc |
#> | github/r4kappa | github/raamlab |
#> | github/rabifier | github/racat |
#> | github/racipe-1.0 | github/ractip |
#> | github/radaa | github/radscripts |
#> | github/ragoo | github/ragout |
#> | github/ragp | github/rail-dbgap |
#> | github/raincloudplots | github/rambl |
#> | github/ramf | github/ramp-backend |
#> | github/rampart | github/ramwas |
#> | github/randal | github/random-forest-protein-ligand-decoy-detection |
#> | github/ranger | github/rapid |
#> | github/rapidaci | github/rapidmic |
#> | github/rapmap | github/rappas |
#> | github/raptr-sv | github/rarefaction |
#> | github/raser | github/rasp |
#> | github/raspberry | github/ratschlab/pbwt-sec |
#> | github/raunaq-m/multires | github/raven |
#> | github/ravensoftware | github/raxml-light-1.0.5 |
#> | github/raxml-ng | github/rbapy |
#> | github/rbbt-workflows | github/rbiomirgs |
#> | github/rbv | github/rcorrector |
#> | github/rcount | github/rcpa.tools |
#> | github/rcppocc | github/rcsm |
#> | github/rcupcake | github/rcupcake-case-studies |
#> | github/rd-analyzer | github/rdb2c |
#> | github/rdolphin | github/rea |
#> | github/reactidr | github/reactiondecoder |
#> | github/reactionflow | github/reactionminer |
#> | github/reactome-pengine | github/read-split-run |
#> | github/readtools | github/reago |
#> | github/recap | github/recov |
#> | github/recovery | github/recursive-chemprot |
#> | github/recycler | github/red-lesion-detection |
#> | github/red-ml | github/redcap-ddp |
#> | github/redetector/red | github/redundans |
#> | github/refbool | github/refeditor |
#> | github/regate | github/regbase |
#> | github/regbenchmark | github/regcombims |
#> | github/regent | github/region-templates |
#> | github/reglinker | github/regmex |
#> | github/regnet | github/regresshaplo |
#> | github/regshape | github/regularized-manova |
#> | github/regulatorynetworkgmpmodel | github/rehunt |
#> | github/relz-fs | github/remap |
#> | github/remilo | github/remma |
#> | github/removepli | github/rendertoolbox3 |
#> | github/rentplus | github/reoa |
#> | github/reparation | github/repdenovo |
#> | github/repeatcraftp | github/repeatseq |
#> | github/repeatsoaker | github/replong |
#> | github/repository | github/reptile |
#> | github/repurpose | github/repviz |
#> | github/reqtl | github/rerconverge |
#> | github/rescore | github/rescore-metabolites |
#> | github/rescue | github/resimnet |
#> | github/response-logic | github/response-logic-projects |
#> | github/respre | github/resseq |
#> | github/retroseq | github/retrotransposons-spread |
#> | github/reverse-engineering-bc-grns | github/rfathm6a |
#> | github/rfscorevs | github/rfscorevs-binary |
#> | github/rgaat-v2 | github/rgeneticthesaurus |
#> | github/rgv | github/rhat |
#> | github/rhe-reg | github/riblast |
#> | github/ribodiff | github/riborex |
#> | github/ribotricer | github/ribotricer-results |
#> | github/riboviz | github/ribowaltz |
#> | github/rifraf.jl | github/riginv |
#> | github/rinbix | github/ringo |
#> | github/risa | github/ritan |
#> | github/ritornello | github/rl-gensvm |
#> | github/rl-skat | github/rlatools |
#> | github/rlowpc | github/rlscore |
#> | github/rm-seq | github/rmats-dvr |
#> | github/rmetl | github/rmfam |
#> | github/rmfilter | github/rmne |
#> | github/rmscca | github/rmsi |
#> | github/rmtl | github/rmut |
#> | github/rna-interactions-benchmark | github/rna-secondary-structure-database |
#> | github/rna3dcnn | github/rnadetect |
#> | github/rnaeditingindexer | github/rnaentropy |
#> | github/rnaifold | github/rnaindel |
#> | github/rnaplonc | github/rnapuzzler |
#> | github/rnaredprint | github/rnaseq-protocol |
#> | github/rnaseqeval | github/rnaseqview |
#> | github/rnie | github/rnmrfit |
#> | github/rnn-for-membrane-protein-types-prediction | github/robokop |
#> | github/robustclusteringpatientsubtyping | github/robustsparsecorrelation |
#> | github/rocketship | github/rodin |
#> | github/roicnn | github/roma |
#> | github/romop | github/romulus |
#> | github/rop | github/ropebwt2 |
#> | github/rosids | github/roulattice |
#> | github/rpowerlib | github/rqt |
#> | github/rrbssim | github/rse |
#> | github/rsfp | github/rsmlm |
#> | github/rsmlm-tutorials | github/rsnapsim |
#> | github/rss | github/rsss |
#> | github/rtfbs-db | github/rtm-gwas |
#> | github/runbng | github/rupee |
#> | github/rvolcano | github/rvs |
#> | github/rvtests | github/rwen |
#> | github/rwr-mh | github/s-predixcan |
#> | github/s2b | github/s3m |
#> | github/s4vdpca | github/sa-ssr |
#> | github/saarclust | github/saber |
#> | github/safeclustering | github/sage2 |
#> | github/sail | github/sailfish-cir |
#> | github/saint2 | github/salivaprint |
#> | github/salmon | github/salsa |
#> | github/samblaster | github/samdude |
#> | github/samfire | github/sammi |
#> | github/samovar | github/sampl5-dc-surface-empirical |
#> | github/sampled-ancestors | github/samtools |
#> | github/sandres | github/sanefalcon |
#> | github/sap | github/sap01-tgs-lite-supplem |
#> | github/sarks | github/sarw-lnkf |
#> | github/sasm-vgwas | github/saspy |
#> | github/sativa | github/saturn |
#> | github/sbb | github/sbc |
#> | github/sbd-evaluation | github/sbetoolbox |
#> | github/sbgntikz | github/sbl |
#> | github/sbml-diff | github/sbml-mod-ws |
#> | github/sbol-validator | github/sbvb0 |
#> | github/sc2p | github/scae-ir-spectral-imaging |
#> | github/scanfold | github/scanindel |
#> | github/scanneo | github/scanpav |
#> | github/scanpy | github/scanvis |
#> | github/scbgfengchao | github/scbs-map |
#> | github/sccaller | github/sccg |
#> | github/scct | github/scdesign |
#> | github/scdnet | github/scellsupplementary |
#> | github/scent | github/scepath |
#> | github/scfba | github/scgeatoolbox |
#> | github/scgen | github/schinter |
#> | github/scifil | github/scikit-ribo |
#> | github/scipion | github/scistree |
#> | github/scmarker | github/scmatch |
#> | github/scmut | github/scoary |
#> | github/scode | github/scop |
#> | github/scot | github/scoup |
#> | github/scout | github/scphaser |
#> | github/scrat | github/screenbeam |
#> | github/screenmasker | github/script-hmm-replication-timing |
#> | github/scrnabatchqc | github/scrnaseq-benchmark |
#> | github/scrnaseq-cell-cluster-labeling | github/scrnaseq-clustering-comparison |
#> | github/scrublet | github/scssim |
#> | github/sct | github/sctcrseq |
#> | github/sctree-test | github/scuba |
#> | github/scvdmc | github/scvi |
#> | github/sda | github/sdeap |
#> | github/sdg | github/seaflow-cluster |
#> | github/sealer-release | github/sechidis |
#> | github/secretsanta | github/section-sort |
#> | github/securema | github/secureqc |
#> | github/sedef | github/seed |
#> | github/seeksv | github/seevis |
#> | github/segmentation-software | github/segmitos-mitosis-detection |
#> | github/selam | github/self-blm |
#> | github/self-organization | github/selfish |
#> | github/selscan | github/sem-cpp |
#> | github/sema | github/semanticprogramming |
#> | github/semanticsco | github/semehr |
#> | github/semgen | github/senet |
#> | github/sepp | github/seq-ppi |
#> | github/seqan | github/seqbuster |
#> | github/seqenv | github/seqkit |
#> | github/seqlib | github/seqlm |
#> | github/seqotron | github/seqpatch |
#> | github/seqsero2 | github/seqsleepnet |
#> | github/sequana | github/sequence-prediction-using-cnn-and-lstms |
#> | github/sequence-search-tool-for-antimicrobial-resistance-sstar- | github/sequence2vec |
#> | github/sereega | github/seroba |
#> | github/serpent | github/set-cover-tools |
#> | github/sexcmd | github/sexy |
#> | github/sf-abc | github/sgspls |
#> | github/sgtk | github/shaker |
#> | github/shamsaraj | github/shaoweinuaa |
#> | github/shape-component-analysis-matlab | github/sharpvisu |
#> | github/shawn-xu/ppip | github/sheikhizadeh/ace |
#> | github/shesisplus | github/shiny-revecor |
#> | github/shiny-seq | github/shinycircos |
#> | github/shinycnv | github/shinyheatmap |
#> | github/shinymethyl | github/shiver |
#> | github/shouji | github/shubhamchandak94/spring |
#> | github/sia | github/sian |
#> | github/siapopr | github/sibjoin.git+ |
#> | github/sid | github/side-effects |
#> | github/sieve | github/sieve-score |
#> | github/sieve-ub | github/sifrproject |
#> | github/sifter-t | github/sigma |
#> | github/sigmat | github/sigmod |
#> | github/signature-sj | github/sigprofilermatrixgenerator |
#> | github/silentmutations | github/silkslider |
#> | github/sim-tmle-tutorial | github/simbac |
#> | github/simclda | github/simd |
#> | github/simextargid | github/simgwas |
#> | github/simka | github/simkern |
#> | github/simlrgithub | github/simpel |
#> | github/simphony | github/simphy |
#> | github/simpleitk-notebooks | github/simra |
#> | github/simsem | github/simug |
#> | github/simulatingcochlearimplants | github/simurg |
#> | github/sinbad | github/sincerities |
#> | github/sine-scan | github/single-cell-review |
#> | github/singlecellassay | github/sinnlrr |
#> | github/sioor | github/sisrs |
#> | github/sitar | github/sixparam |
#> | github/sjaracne | github/skandlab/smurf |
#> | github/skesa | github/skpcr |
#> | github/skygrowth | github/slamem |
#> | github/slantbrainseg | github/sle |
#> | github/sleepeegnet | github/slicemap |
#> | github/slide | github/slimenrich |
#> | github/slimer | github/slimmer |
#> | github/slin | github/slr |
#> | github/sm-engine | github/smallgenometools |
#> | github/smartr | github/smash |
#> | github/smcgenedeconv | github/smilesvecproteinrepresentation |
#> | github/smirarab/pasta | github/smith2012-insulin-signalling |
#> | github/smlocalizer | github/smrt |
#> | github/smrt-pipeline | github/sms |
#> | github/smudge | github/smurf |
#> | github/snakepipes | github/snapperdb |
#> | github/snapperdb-references | github/snappy |
#> | github/snaptron | github/snaptron-experiments |
#> | github/snftool | github/sniffles |
#> | github/sniper | github/snipviz |
#> | github/snovault | github/snowball |
#> | github/snp-select | github/snp-sites |
#> | github/snp2sim | github/snpclust |
#> | github/snpenrichr | github/snpfilt |
#> | github/snpgenie | github/snpr |
#> | github/snpsvm | github/snvphyl-galaxy |
#> | github/snyder-birth-death-code | github/sodapop |
#> | github/sofia | github/solarius |
#> | github/solidbin | github/solidmon |
#> | github/solrplantapi | github/solver-for-the-jeffreys-type-equations-system |
#> | github/som | github/sonar |
#> | github/sonics | github/sopang |
#> | github/sora | github/sorting-cancer-karyotypes |
#> | github/sourmash | github/sowhat |
#> | github/spaced-seeds-for-metagenomics | github/spacescanner |
#> | github/spades | github/spadevizr |
#> | github/spagi | github/spar-k |
#> | github/sparc | github/spark-cpvs |
#> | github/spark-vs | github/sparkbwa |
#> | github/sparse-lowrank-regression | github/sparseiso |
#> | github/sparsemcmm | github/spcapp |
#> | github/spcovr | github/spdrank |
#> | github/speaq | github/spectacle |
#> | github/specter | github/spectraph |
#> | github/spectrassembler | github/spectre |
#> | github/spectreok | github/spectrogene |
#> | github/spectrum | github/spedeimportance |
#> | github/spherical | github/sphyr |
#> | github/spiddor | github/spike-compression-autoencoder |
#> | github/spin-scenario | github/spind |
#> | github/spladder | github/splicefamalign |
#> | github/splicejumper | github/splicelauncher |
#> | github/spliceogen | github/splicesites-ann-cgr |
#> | github/splicev | github/splicify |
#> | github/splicing-analysis-pipeline | github/spm |
#> | github/spm-code | github/sports1.0 |
#> | github/spot-a-neonatalrabbit | github/spotyping-v2.0 |
#> | github/sppider | github/spread |
#> | github/springsalad | github/sprint |
#> | github/sprint-race | github/sprites |
#> | github/sprites2 | github/spurf |
#> | github/sputnik | github/spv-signaling-pathway-visualizer-v1.0 |
#> | github/squadbookchapter | github/squat |
#> | github/squeakr | github/squeezemeta |
#> | github/squiggle | github/squigglekit |
#> | github/squire | github/srbreak |
#> | github/srf | github/srhtests |
#> | github/ssages-public | github/ssasu |
#> | github/ssbio | github/sscclust |
#> | github/ssdfa | github/ssgsea2.0 |
#> | github/sskat | github/ssp |
#> | github/ssp-lsdr | github/ssrsc |
#> | github/sss-test | github/sst |
#> | github/ssusearch | github/st-pipeline |
#> | github/st-viewer | github/stablede |
#> | github/star-genome-browser | github/starchip |
#> | github/starcode | github/startapp |
#> | github/stasnet | github/statistical-agglomeration |
#> | github/steadystateconc | github/stego |
#> | github/stells2 | github/stemcellsva |
#> | github/stereoseg | github/stillbirth |
#> | github/stk | github/stochastic-diffusion |
#> | github/stochhmm | github/stopgap |
#> | github/stp-gui | github/stra-net |
#> | github/straingems | github/strainhub |
#> | github/strainseeker | github/strandscript |
#> | github/strassembly | github/strawberry |
#> | github/streamingtrim | github/strelka |
#> | github/streptomyces-coelicolor-gem | github/stretch |
#> | github/stride | github/stripes |
#> | github/structure-threader | github/structurefold2 |
#> | github/struo | github/studyprotocolsandbox |
#> | github/stytra | github/subcellular-localization |
#> | github/subcloneseeker | github/subclpred |
#> | github/subdyquency | github/submatrixselectionsvd.jl |
#> | github/submito-xgboost | github/submodulartrack |
#> | github/subnetwork-inference | github/subrecon |
#> | github/subseq | github/substra |
#> | github/suget | github/suicidalaltruismdissertation |
#> | github/sumac | github/sumer |
#> | github/summaryauc | github/sumsec |
#> | github/sunbeam | github/suns |
#> | github/suns-cmd | github/suns-search |
#> | github/supcp | github/super-i2b2 |
#> | github/super-resolution-adversarial-defense | github/superangle |
#> | github/superbubble | github/superencoder |
#> | github/superproteintree | github/superquantnode |
#> | github/suretypesc | github/surfelmeshing |
#> | github/surpriseme | github/surrogateminimaldepth |
#> | github/survindel | github/survival |
#> | github/survivalcausaltree | github/sushi |
#> | github/sv-bay | github/sv-plauditdemonstration |
#> | github/sv2 | github/svaseq |
#> | github/svdquest | github/sve |
#> | github/svict | github/svim |
#> | github/svmine | github/svpv |
#> | github/svtools | github/sw-tandem |
#> | github/swapcounter | github/swarmsight |
#> | github/swift-t-variant-calling | github/swiftlink |
#> | github/swiftortho | github/swinger |
#> | github/switchablenorms | github/swne |
#> | github/sword | github/swpepnovo |
#> | github/symmetry | github/synergy-screen |
#> | github/synima | github/synquant |
#> | github/synrio | github/syntenybrowser |
#> | github/synthesizer | github/sysbiolux/falcon |
#> | github/szczepankiewicz-dib-2019 | github/t-cell-classification |
#> | github/t-lex3 | github/t-sne-heatmaps |
#> | github/t2ga | github/taba |
#> | github/tabsat | github/tad-fusion-score |
#> | github/tada | github/tadbit |
#> | github/tadoss | github/tadtool |
#> | github/tagfinder | github/tagger |
#> | github/taiji | github/tailor |
#> | github/tangle | github/tango-final |
#> | github/tangram | github/tankche1 |
#> | github/tapas | github/tapes |
#> | github/tappm-cli | github/tar-vir |
#> | github/tardis | github/targetclone |
#> | github/targetmine-gradle | github/targetseqview |
#> | github/targetspecificgatksequencingpipeline | github/taska |
#> | github/tawny-karyotype | github/tax-credit-data |
#> | github/tbe | github/tc-recon |
#> | github/tcc-gui | github/tcga-assembler-2 |
#> | github/tcga-rnaseq-clinical | github/tcgenerators |
#> | github/tciapathfindersignificance | github/tcrclusteringpaper |
#> | github/tcsbu | github/tcsm |
#> | github/tea | github/teacheng |
#> | github/teachopencadd | github/team |
#> | github/tecandidates | github/tefma |
#> | github/tegs | github/telescope |
#> | github/temp | github/temt |
#> | github/tensqr | github/tepic |
#> | github/terapca | github/terraphast |
#> | github/tersect | github/testsetbias |
#> | github/tetools | github/tetyper |
#> | github/texomer | github/text-image-deblur |
#> | github/tf-chan-lab/omtools | github/tf2exp |
#> | github/tfanalysis | github/tfbayes |
#> | github/tfce-mediation | github/tfea.chip-downloads |
#> | github/tfit | github/tfregulomer |
#> | github/tft | github/tgnet |
#> | github/tgvaughan/icytree | github/thapmix |
#> | github/theprecisionlasso | github/thermonet |
#> | github/theta | github/thetamater |
#> | github/tibanna | github/tide-for-ptm-search |
#> | github/tidehunter | github/tigar |
#> | github/tigeri | github/timeseriesnem |
#> | github/timing2 | github/tisan |
#> | github/tisk1.0 | github/tissue-enrichment-test |
#> | github/titer | github/tivan |
#> | github/tksamc | github/tlcr-rl |
#> | github/tmcrys | github/tmtscca |
#> | github/tn-seqexplorer | github/tn-test |
#> | github/tner | github/tnm |
#> | github/tnrs | github/tnseq |
#> | github/to-mi | github/toast |
#> | github/tobmi | github/toggle |
#> | github/togogenome | github/togostanza |
#> | github/toner | github/tongchf |
#> | github/toolbox-romano-et-al | github/topas |
#> | github/tophat-recondition | github/topological-measures-wide-analysis |
#> | github/tormes | github/towards-reliable-bioner |
#> | github/toxreporter | github/tpglda |
#> | github/tpmcalculator | github/tpot |
#> | github/tpot-fss | github/tqec |
#> | github/trac | github/tractaviewer |
#> | github/trader | github/trainbenchmark |
#> | github/traitar | github/transcriptclean |
#> | github/transcriptome-assembly-pipeline | github/transfer-learning-bner-bioinformatics-2018 |
#> | github/transformphenotype | github/transit |
#> | github/transmart-xnat-connector | github/transphylo |
#> | github/transposons | github/trap |
#> | github/traveler | github/traxtile-public |
#> | github/trca-ssvep | github/tree-hmm |
#> | github/treecluster | github/treeexp-tutorial |
#> | github/treegrafter | github/treehouse |
#> | github/treemerge | github/treepl |
#> | github/treescaper | github/treesgs |
#> | github/treeshapestats | github/treeshrink |
#> | github/treewas | github/trig |
#> | github/triocnv | github/triomdr |
#> | github/tripal-analysis-expression | github/tripal-elasticsearch |
#> | github/tripoly | github/trna-read-mapping |
#> | github/tron | github/trove |
#> | github/trs | github/trtcrd/slim |
#> | github/truc | github/trup |
#> | github/tsam | github/tsapa |
#> | github/tscan | github/tsd |
#> | github/tsis | github/tsnad |
#> | github/tsnet | github/tsvdb |
#> | github/ttree-source | github/ttt |
#> | github/tumor-clones | github/tumorcnv |
#> | github/tunnex | github/tusv |
#> | github/tvb-empirical-data-pipeline | github/tw2 |
#> | github/twisst | github/two-layer-qrcode |
#> | github/twopaco | github/typeloader |
#> | github/u-pass | github/ubd |
#> | github/ublastx-stageone | github/uclinfectionimmunity/decombinator |
#> | github/ucscnanopore-data | github/uea-srna-workbench |
#> | github/ukbrest | github/ularcirc |
#> | github/umediation | github/umib |
#> | github/umis | github/umons-taichi |
#> | github/uncertainty-components | github/uncover |
#> | github/uncurl-python | github/under |
#> | github/undwive | github/uniconsig |
#> | github/unicycler | github/uniqtag |
#> | github/uniqtag-paper | github/unity |
#> | github/universal-tts | github/uorf-tools |
#> | github/upho | github/uproc |
#> | github/upsetr | github/upstrap |
#> | github/uqsa | github/usefulplants-indicator |
#> | github/uslcount | github/uspikehunter |
#> | github/uv-posit | github/uvp |
#> | github/vacceed | github/valor |
#> | github/vankrevelenlocal | github/vapid |
#> | github/vapper | github/vapr |
#> | github/varan-gie | github/varanto |
#> | github/varcap | github/varcmp |
#> | github/vargenius | github/vargeno |
#> | github/vari | github/vari-merge |
#> | github/variancecomponenttest.jl | github/variant-validation |
#> | github/variantbam | github/variantsdwh |
#> | github/varianttoolchest | github/varmatch |
#> | github/varscot | github/vashr |
#> | github/vasp | github/vbt-trioanalysis |
#> | github/vccri/c3 | github/vcf-kit |
#> | github/vcf-plotein | github/vcfanno |
#> | github/vcftotree-3.0.0 | github/vcmicrobiome |
#> | github/vcnet | github/vcselection |
#> | github/vdjdb-db | github/vdjer |
#> | github/vdjtools | github/vdjviz |
#> | github/vecscreen-plus-taxonomy | github/vep-plugins |
#> | github/verse | github/versioned-data |
#> | github/vertical-tracts | github/vgteam/vg |
#> | github/vhost-classifier | github/vic |
#> | github/video-database | github/viennarna |
#> | github/viewbs | github/vifi |
#> | github/vigen | github/vimco |
#> | github/vip | github/viper |
#> | github/vipr-mat-peptide | github/virapipe |
#> | github/virbin | github/virgena |
#> | github/viromic-diversity | github/virtual-reality-chemical-space |
#> | github/virulign | github/viruses-classifier |
#> | github/visfeature | github/visid |
#> | github/visioprot-ms | github/visjs2jupyter |
#> | github/vislab/eeg-blinks | github/visnormsc |
#> | github/visor | github/vizardous |
#> | github/vomm | github/voronto |
#> | github/voxelmorph | github/vp |
#> | github/vpac | github/vpot |
#> | github/vseams | github/vsearch |
#> | github/vt | github/w4cseq |
#> | github/walking-rdf-and-owl | github/walt |
#> | github/warfarin-cohort | github/warp |
#> | github/warpgroup | github/waternn |
#> | github/wavecnv | github/wcmc-research-informatics |
#> | github/wdnfinder | github/wdstar |
#> | github/webgivi | github/webmolcs |
#> | github/wenda | github/wenpingd |
#> | github/wfes | github/wft4galaxy |
#> | github/wgd | github/wgfast |
#> | github/wgs-analysis-demo | github/whatshap |
#> | github/whisper | github/wholecellsimdb |
#> | github/wipp | github/wisecondorx |
#> | github/wish | github/workflow-of-chipseq |
#> | github/workflowr | github/workflows |
#> | github/worm-single-cell-data-and-codes | github/wscunmix |
#> | github/wtchg-rg | github/wuetal2017 |
#> | github/wyrm | github/x-cnn |
#> | github/x2h | github/xander-assembler |
#> | github/xenofilter | github/xenophile |
#> | github/xgsa | github/xifdr |
#> | github/xispec | github/xitosbml |
#> | github/xlsearch | github/xmabio |
#> | github/xmanv2 | github/xmrf |
#> | github/xmwas | github/xolotl |
#> | github/xomeblender | github/xulabs/projects |
#> | github/yalff | github/yalla |
#> | github/yamda | github/yeast-segmentation |
#> | github/ymap | github/yoann-dufresne/slim |
#> | github/yoc | github/yoheirosen/vg |
#> | github/ytzhong/projects | github/z-spacing |
#> | github/z-spacing-spark | github/z-transform-method |
#> | github/zerone | github/zerosum |
#> | github/zibr | github/zing |
#> | github/zombi | github/zorro |
#> | gitlab/leen | gmap |
#> | golang | gridss |
#> | gvmap | higlass |
#> | hisat2 | htseq |
#> | htslib | i-boost |
#> | igraph | iguide |
#> | igv | imagej |
#> | in-silico-labeling | interproscan |
#> | irfinder | iseq |
#> | isop | ivtnmr |
#> | jaffa | jvarkit |
#> | ldsc | leafcutter |
#> | leap | libgtextutils |
#> | liftover | liteq |
#> | lofreq | lsmm |
#> | lzo | lzop |
#> | macs | maftools |
#> | magic | manta |
#> | maorm | mapsplice2 |
#> | marginphase | marvel |
#> | mask-rcnn | mcorr |
#> | mdseq | mecat |
#> | melissa | micropro |
#> | mimosca | miniconda2 |
#> | miniconda3 | mistic |
#> | mixcr | mmsplice |
#> | mosdepth | mrnn |
#> | mscentipede | multiqc |
#> | mutect | mutscan |
#> | ncboost | nextflow |
#> | ngb | ngs-qc-toolkit |
#> | ngstk | nodejs |
#> | novoalign | oases |
#> | olego | oncotator |
#> | opencpu | other/paradigm |
#> | outrigger | paga |
#> | paletter | pathopredictor |
#> | pcgr | pcre |
#> | phenograph | phenopredict |
#> | picard | picky |
#> | pigz | pindel |
#> | plier | plotly.js |
#> | plyranges | prada |
#> | prinseq | prosit |
#> | protein/pv | pxz |
#> | qap | quest |
#> | qvalue | r |
#> | r-color-palettes | r2d3 |
#> | raceid | radia |
#> | rapid | rca |
#> | recount | reditools |
#> | reffa/defuse | reffa/encode-hg19 |
#> | reffa/encode-hg19-ataqc | reffa/encode-hg19-bowtie2-index |
#> | reffa/encode-hg19-bwa-index | reffa/encode-hg38 |
#> | reffa/encode-hg38-ataqc | reffa/encode-hg38-bowtie2-index |
#> | reffa/encode-hg38-bwa-index | reffa/encode-mm10 |
#> | reffa/encode-mm10-ataqc | reffa/encode-mm10-bowtie2-index |
#> | reffa/encode-mm10-bwa-index | reffa/encode-mm9 |
#> | reffa/encode-mm9-ataqc | reffa/encode-mm9-bowtie2-index |
#> | reffa/encode-mm9-bwa-index | reffa/ensemble |
#> | reffa/fusioncatcher | reffa/genecode |
#> | reffa/rmats | reffa/ucsc |
#> | relaxed | resm |
#> | rhat | rmats |
#> | root | rop |
#> | rum | samblaster |
#> | samstat | samtools |
#> | saver | scgen |
#> | sclvm | scnorm |
#> | scrabble | scvi |
#> | sda | se-mei |
#> | selene | sellerslab-gemini |
#> | seqtk | seurat |
#> | simlr-py | singlesplice |
#> | skmer | sleuth |
#> | snakemake/dna-seq-gatk-variant-calling | snakemake/sequana |
#> | snpeff | solexaqa |
#> | somatic-sniper | spack |
#> | sparsehash | speedseq |
#> | sqlite | sratools |
#> | srnanalyzer | ssaha2 |
#> | star | strawberry |
#> | strelka | stringtie |
#> | subread | sv2 |
#> | svaba | svscore |
#> | svtools | taxmaps |
#> | tbb | test/github-demo |
#> | threadpool | three.js |
#> | tmap | topconfects |
#> | tophat | tracer |
#> | trendsceek | trimgalore |
#> | trinityrnaseq | tvc |
#> | ucsc | unet-segmentation |
#> | unifrac | useq |
#> | vadir | varscan |
#> | vcf2maf | vcfanno |
#> | vcflib | vcftools |
#> | velvet | vep |
#> | vg | vifi |
#> | viper | viral-ngs |
#> | wdl/antonkulaga | wdl/bgm-cwg-whole-exome-sequencing |
#> | wdl/bgm-cwg-whole-genome-sequencing | wdl/biowdl-aligning |
#> | wdl/biowdl-bam-to-gvcf | wdl/biowdl-chip-seq |
#> | wdl/biowdl-gams | wdl/biowdl-germline-dna |
#> | wdl/biowdl-jointgenotyping | wdl/biowdl-pipeline-template |
#> | wdl/biowdl-qc | wdl/biowdl-rna-seq |
#> | wdl/biowdl-somatic-variantcalling | wdl/biowdl-tasks |
#> | wdl/biowdl-virus-assembly | wdl/brass |
#> | wdl/deepvar | wdl/deepvariant-glnexus |
#> | wdl/encode-chipseq2 | wdl/firecloud-tools |
#> | wdl/gatk-3-4-intel-germline-snps-indels | wdl/gatk-3-4-rnaseq-germline-snps-indels |
#> | wdl/gatk-3-data-processing | wdl/gatk-3-intel-germline-snps-indels |
#> | wdl/gatk-4-data-processing | wdl/gatk-4-germline-snps-indels |
#> | wdl/gatk-4-intel-germline-snps-indels | wdl/gatk-4-intel-somatic-with-preprocessing |
#> | wdl/gatk-4-somatic-cnvs | wdl/gatk-4-somatic-snvs-indels |
#> | wdl/gatk-4-somatic-with-preprocessing | wdl/gatk-five-dollar-genome-analysis |
#> | wdl/gatk-intel-faster-alternative-samples | wdl/gatk-seq-format-conversion |
#> | wdl/gatk-seq-format-validation | wdl/gatk-wgs-germline-snps-indels |
#> | wdl/genomics-iter-developers-wgs-wes-germline | wdl/hongiiv-gatk-workflows |
#> | wdl/jimmybgammyknee-workflows | wdl/johnmous-chip-seq |
#> | wdl/kurt-hetrick-variants | wdl/mayomics-vc |
#> | wdl/metagenophile | wdl/mgs-sop |
#> | wdl/oskarvid-germline-pipeline | wdl/ottojolanki-kallisto |
#> | wdl/pacbio-tools | wdl/raisok-rnaseq |
#> | wdl/saige | wdl/sanderest-cromwell |
#> | wdl/seonwhee-genome-gatk | wdl/tsca-firecloud |
#> | wdl/uofabio | wdl/wgsa-parsr |
#> | wham | xpdf-tools |
#> | xz | zifa |
#> | zinbwave | zlib |
#> +++Maintainer
- [@Jianfeng](https://github.com/Miachol)
License
Academic Free License version 3.0